Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq172366 120 4e-22 seq110696 86.0 7e-12 >seq172366 Length=6938 Score = 120 bits (132), Expect = 4e-22 Identities = 447/693 (65%), Gaps = 21/693 (3%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||||||| |||||| | || |||||| |||| |||| || ||||||||||| Sbjct 4118 GAAACTGGAACACCTTATATGTTATATAAGGATTCTTGCAACAGAAAAAGTAACCAAAAA 4177 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | ||||| || || || ||| | ||||| |||||| |||| || ||| | Sbjct 4178 AATGTTGGAACCATTAAATGCAGCAATTTGTGCACAGAAATTGTAGAATATTCAGCACCG 4237 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 || |||| |||||||| || |||| || || || || | || ||| | | Sbjct 4238 GACGAGATAGCTGTTTGTAACCTGGCGTCTATTGCTCTAAACATGTTTGT---TTCTGCT 4294 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | | | |||||| | | |||| ||| | ||| | ||||| | ||||| |||||| | Sbjct 4295 AATAAGATTTTTGACTTTCAAAAGCTTAAAGAAGTTACAAAAACAGTTACAAAAAATTTG 4354 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATG 76201 || | |||| || | |||| |||||| || || || | || || |||||| Sbjct 4355 AATAAAATCATAGATATCAATTATTATCCTCTTCCCGAAGCTAAG---AAATCAAATATG 4411 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 |||| |||| || || | || ||||| || |||| |||| | | || || || Sbjct 4412 AGACATCGACCCATAGGAATTGGGGTTCAGGGCTTCGCTGATGCACTAATACTGATGCGT 4471 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 ||| ||| ||| || |||| | | ||| | || |||||||| || || Sbjct 4472 TACCCATATGAAAGTGAGCAAGCATATTTATTAAATATCCAAATATTTGAAACAATCTAC 4531 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 | | | | ||||| || || ||||| || ||| ||| | ||||| ||| | Sbjct 4532 TATGGGGCATTAGAGGCTAGCTGCGAATTAGCGGAAATGTTAGGGCCTTATGAATCATAT 4591 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 || || ||| | | | ||||| | || | || ||||||| | || | ||||| Sbjct 4592 GAAGGGAGTCCTGTAAGCAACGGGGTATTGCAATACGACATGTGGG-ACGTTACACCAA- 4649 Query 76442 CTCA-AC---TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 || || | || ||| ||| | | ||||| || | | ||| | || | Sbjct 4650 --CAGACTTGTGGGATTGGAATGCTTTGAAGGAGAAAATTTCCAAACATGGTGTACGGA- 4706 Query 76498 CAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 | ||||| | | || || ||||| ||||| || || || ||||| | || |||||| Sbjct 4707 -ATTCTTTACTTGTTGCTCCTATGCCTACAGCATCTACAGCTCAAATTCTAGGAAATAAT 4765 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTAC 76588 |||| ||||||||| || || | || || ||| Sbjct 4766 GAATCCTTTGAACCGTATACCTCTAATATATAC 4798 >seq110696 Length=2941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || ||| | | || ||| | || || ||| ||||||| |||||| Sbjct 344 CCTGGTACTGGCAAAACCTTGTTAGCGAAAGCAACAGCAGGCGAAGCAAATGTGCCATTC 285 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | |||| | | | ||| |||| |||||||| ||||| || | | || Sbjct 284 ATTACGGTTTCTGGCTCGGAATTTTTGGAAATGTTTGTCGGTGTTGGACCATCGCGTGTA 225 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||| | |||| ||| ||||| || || ||||| || | ||||||||||||||| Sbjct 224 CGTGATATGTTTGCAATGGCCCGTAAACATGCGCCATGCATACTATTCATTGATGAGATT 165 Query 175495 GATGCGGTGGGC 175506 |||||||| ||| Sbjct 164 GATGCGGTCGGC 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595283985054880