Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq169730 100 5e-16 seq76123 91.5 3e-13 >seq169730 Length=1905 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| |||||||| || || | |||||| || || || ||||| ||||| Sbjct 1899 TCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 1840 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| |||||||| || | || || || ||||| ||| Sbjct 1839 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 1780 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || | || || | ||| |||||||| || Sbjct 1779 GTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATT 1742 >seq76123 Length=2128 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | | || | || | ||| | || | |||||| || ||||| Sbjct 982 ATAATACCACCACGCAAGCGGAGCACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAG 1041 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||| | ||| | || |||||||| ||||||||||||||||| | || || || Sbjct 1042 TCGGATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATTAAACGTTGCTGATCT 1101 Query 171957 GGTGGTATTCCTTCTTTATCTTG 171979 ||||| || |||||||||||||| Sbjct 1102 GGTGGAATACCTTCTTTATCTTG 1124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903185420605800