Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq172366 170 6e-37 seq88972 140 1e-27 seq110696 127 6e-24 seq172365 84.2 6e-11 >seq172366 Length=6938 Score = 170 bits (188), Expect = 6e-37 Identities = 727/1130 (64%), Gaps = 29/1130 (3%) Strand=Plus/Minus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTG-TAATTGCTCCTGCTTGT 155464 || || || |||||||| ||||| || | || ||||| || || ||| | | ||| Sbjct 4452 TCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTCATATTTGAT--TTCTTAG 4395 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 |||| | || ||| |||| | ||| || || ||||| |||||| ||||| | Sbjct 4394 CTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTT- 4336 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 || || || ||| | || | ||||||| | |||| || |||||||| Sbjct 4335 --TTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGT 4278 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638 ||| ||||||||||||| ||||| || || |||| | || |||| |||||||| Sbjct 4277 TTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTC--CGGTGCTGAATATTCTAC 4220 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 ||| || ||||| || | || ||||| || | ||| || |||||| ||| || Sbjct 4219 AATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCT 4160 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| |||| |||||| |||| || || || ||||| || || | ||||| || | || Sbjct 4159 GTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGAT 4100 Query 155759 CTTTAGCCAGAGGTCAC-GGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT 155817 | ||| | || || | || ||||||| | || | |||||| ||||||| Sbjct 4099 AGCAAACCACA-GTGACTGAGCTTTAATTTTTCTATTAGCACGGCCTTCTTTTTCATATT 4041 Query 155818 TCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCG 155876 | ||||| | ||| || || || || || ||| || || ||||| |||| | Sbjct 4040 TTTCATACAAC-TTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGG 3982 Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGAT--TACACGCTCCATAAATACATCACTCG 155934 || || | || ||||| | || | ||| ||| || | |||||| | |||| Sbjct 3981 GGACACATTAGTGACCAGTCTCCAT--CAGATTCTACGCGTTTCATAAAAAGATCAGGAA 3924 Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTA 155994 ||| | ||| || || | ||| | ||| | || || | || ||| || | Sbjct 3923 TCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCA 3864 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 ||||| || || |||||| | ||| ||||||| ||| ||||| || || Sbjct 3863 AGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGG 3804 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 ||| || |||||| || |||||||| || || ||||| || || | | ||||| Sbjct 3803 GCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAAACTCTCAACATAG 3744 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 | | | |||||| || || ||||| || |||| ||| | || | |||| | Sbjct 3743 GCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATAC 3684 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231 ||||| || | |||||| || || | |||| ||||| || |||| | ||||| Sbjct 3683 AATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAG 3624 Query 156232 TATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATT 156291 |||||||| |||||||| ||||| || |||||| || | | | || || | || Sbjct 3623 ATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTT 3564 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 | || | | |||| |||| |||| || || | ||||| |||| || || | || Sbjct 3563 GTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAG 3504 Query 156352 ACATATAATCGTATGTCTCCTT--AATCTTCTCAAGATTAGACCCGTGAATACAGATAGA 156409 | | ||| |||||| || | | | || | | | | ||||| || | | || Sbjct 3503 AAAGCAAATTGTATGTTTCAATGGCAGCATC-GATGTCTTCA-CCGTGTATTCCAACTGA 3446 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTA 156469 || |||||| |||||||||| || | |||||||| || | || | || | || Sbjct 3445 TACTCTCATCAACATATGCTGTGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATA 3386 Query 156470 TGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 || ||||| ||||| ||||| || || |||| | ||||||||||| Sbjct 3385 TGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAATCACGGT 3336 >seq88972 Length=1669 Score = 140 bits (154), Expect = 1e-27 Identities = 226/323 (70%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 288826 TCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCT 288885 || || ||| | || | ||| ||| |||||| | ||||| | ||||| ||| || Sbjct 1657 TCTGGTAAATCAACATGTACCATCCGATCAAAACGACCAGGTCTTGTTAAAGCTTTATCC 1598 Query 288886 AATATATCGGCTCTGTTTGTTGCTGCCAATACAA---CAATAGATTCGGTTTGCTTAAAT 288942 |||||||||||||| || || ||||| | |||| || ||||||| ||| ||| Sbjct 1597 AATATATCGGCTCTATTAGTAGCTGCAATCACAATTACATTAGATTCTGTTCC---AAAG 1541 Query 288943 CCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTT 289002 |||||||| || |||| ||||| | ||| | ||| || |||||||| |||||| Sbjct 1540 CCATCCATTTCAGTCAAAAGCTGATTTAATGTATTTTCTCTCTCATCATTAGAACCTGAA 1481 Query 289003 GAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 ||| | || | | ||| | |||||| |||||||||||| || || || || | Sbjct 1480 AAATTA---GATTTTCCTCTTGATCTACCAATAGCATCAATTTCATCTATAAATATAATC 1424 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 | ||||| |||| | | ||| || |||||| ||||| || || || || |||| || Sbjct 1423 GAAGGAGATTTTTCTTTTGCATTTTTAAATAAATCTCTAACGCGAGAAGCCCCAACTCCT 1364 Query 289123 ACATACATTTCTACAAATTCAGA 289145 ||| ||||||| ||||| || || Sbjct 1363 ACAAACATTTCAACAAAATCTGA 1341 >seq110696 Length=2941 Score = 127 bits (140), Expect = 6e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || |||||||| || |||||||| | | || || | || || | || |||||| Sbjct 154 CCGACCGCATCAATCTCATCAATGAATAGTATGCATGGCGCATGTTTACGGGCCATTGCA 213 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | |||||| |||| ||||| ||| ||| ||||||| | |||||| || | Sbjct 214 AACATATCACGTACACGCGATGGTCCAACACCGACAAACATTTCCAAAAATTCCGAGCCA 273 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || |||||||| |||||||||||||||||| ||| |||| | | || || Sbjct 274 GAAACCGTAATGAATGGCACATTTGCTTCGCCTGCTGTTGCTTTCGCTAACAAGGTTTTG 333 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || ||||||||||| ||| | | | || ||||||| ||| || || Sbjct 334 CCAGTACCAGGTGGTCCAGTTAACATAGCACCTTTTGGTATTTTCGCACC 383 >seq172365 Length=6911 Score = 84.2 bits (92), Expect = 6e-11 Identities = 149/213 (70%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 289162 AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 |||| ||||||||||| || || || || || |||| || ||||| || || || || Sbjct 3351 AATGGGACATTTGCTTCTCCAGCAACAGCTCTTGCCAAGAGGGTCTTTCCGGTGCCTGGA 3410 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT----TATATTTCTC 289277 || || |||||| || || ||||||| |||| | ||| ||| | || ||||| Sbjct 3411 GGACCAACTAATAATACACCTTTTGGTAATTTTCCTCCA--AGATTGGAGAATTTTTCT- 3467 Query 289278 AGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTG 289336 || | ||||| || ||||| | || | | ||| | ||||| |||||||||||| Sbjct 3468 --GGATTTTTAAGGAACTCTACGACCTCTTTTAATTCTTGCTTTGCTTCATCACATCCTT 3525 Query 289337 CTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 || ||| ||||||| | || ||| || |||| Sbjct 3526 TCACGTCATCAAAAGTTACATGAATTTC-TTCT 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468566520041137