Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq18725 105 2e-18 seq90214 95.1 4e-15 >seq18725 Length=24047 Score = 105 bits (116), Expect = 2e-18 Identities = 240/358 (67%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 33173 CTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAAT 33232 || ||||||| || |||||||| | ||||| | | || ||||| || || ||||||| Sbjct 10198 CTAGAGGAATAAATAAAGTAATTTTATTGGGGCATTTAGGGCAAGATCCTGATGTTAAAT 10257 Query 33233 ATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACG 33292 ||||||| ||| || || || || | | | |||||||| || ||||| | Sbjct 10258 ATATGCCAAATGGTGGTGCAGTTACGAACTTAACGATTGCAACATCGGAAACTTGGAAAG 10317 Query 33293 ATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAA 33352 ||||| |||||| | |||| | ||||||||||| || | ||||| || |||| Sbjct 10318 ATAAACAAACAGGTCAGCCACAAGATCGTACAGAATGGCACCGAATTGTTATTTTTGGAA 10377 Query 33353 AGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAA 33412 | || || || | || || |||| || ||||| || | || ||| | ||||| Sbjct 10378 AACTTGCTGAAATTGCAGGTCAATATCTTAAAAAAGGTTCGCTTGTTTATATTGAAGGTC 10437 Query 33413 AATTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAAATCG 33472 |||||| || | |||||||| ||| ||| ||| || || || || ||||||| Sbjct 10438 AATTACAAACAAGAAAATGGACGGATAAAAACGGACAAGATCGTTATACAACAGAAATCG 10497 Query 33473 TCTTGCAGCCTATGAACGGCGTTATGCAAATGATTGGTGGTAAATCAAGTGATAATGG 33530 | | |||| || || ||| | |||||| ||| | |||| | | |||||||| Sbjct 10498 T-TGTCAGC--ATTAATGGCACGCTCCAAATGCTTGATCGTAA---AGGCGATAATGG 10549 >seq90214 Length=2210 Score = 95.1 bits (104), Expect = 4e-15 Identities = 190/273 (70%), Gaps = 13/273 (5%) Strand=Plus/Minus Query 33177 AGGAATCAACAAAGTAATCATTTTGGGC-ACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 ||| ||||| ||||| || | || ||| ||| | |||||||| || |||||||| |||| Sbjct 1015 AGGTATCAATAAAGTTATATTATTAGGCCACT-TAGGACAAGATCCTGAAGTTAAGTATA 957 Query 33236 TGCCTTCTGGCGGCGCTGTGTGC-AATCTGTCTCTGGCAACATCAGAGCAGTGGAACGAT 33294 ||||| ||| || || ||| ||||| | |||||||| || ||||| ||| Sbjct 956 TGCCTAATGGAAATGCCGT-TGCGAATCTAAACATTGCAACATCTGAAAGCTGGAAAGAT 898 Query 33295 AAAGCAACAGG---GGAA-AAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGG 33350 ||| | |||| | || |||| ||| || ||||||||||| || ||||| || || Sbjct 897 AAACAATCAGGACAGCAACAAGATAGA----ACTGAATGGCATCGTGTAGTTATTTTTGG 842 Query 33351 AAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGG 33410 ||||| || || | || || |||| || ||||| || | || ||| | || || Sbjct 841 CAAGCTTGCGGAAATTGCAGGTCAATATCTCAAAAAAGGATCACTTGTTTATATCGAGGG 782 Query 33411 AAAATTACGTACTCGCAAATGGACAGAT-CAAA 33442 |||| | | ||| | || ||||| ||| |||| Sbjct 781 AAAAATTCAGACTAGAAAGTGGACTGATACAAA 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151733524477668