Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq34316 102 9e-17 seq132057 91.5 2e-13 >seq34316 Length=5879 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 148126 TTTTACGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGG 148184 |||||||||||||||| |||| ||| | ||||| ||||||||||| |||||||||||| Sbjct 1553 TTTTACGGGGTGTAGCGTAGCCCGGTCATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGG 1612 Query 148185 TTCAAATCCTGCCACCCCGATTT 148207 ||| |||||||||||||||| || Sbjct 1613 TTCGAATCCTGCCACCCCGACTT 1635 >seq132057 Length=1668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 148131 CGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 ||||||||||| |||| ||| | ||||| ||||||||||| ||||||||||||||| | Sbjct 189 CGGGGTGTAGCGTAGCCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGGTTCGA 248 Query 148190 ATCCTGCCACCCCGA 148204 ||||||||||||||| Sbjct 249 ATCCTGCCACCCCGA 263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 147057 CAGTAGCTCAGC-GGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCT 147115 |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 277 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 336 Query 147116 GCCTG 147120 | ||| Sbjct 337 GACTG 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548437956857720