Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021796.1 Length=72534 Score E Sequences producing significant alignments: (Bits) Value seq110872 140 2e-28 >seq110872 Length=1644 Score = 140 bits (154), Expect = 2e-28 Identities = 375/565 (66%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 19298 TCCATAAGGCATTATTTTATCTAATACGTCTCCAAGTCCAAAACTCTCCATTTGGTCTTG 19357 |||||||||||| |||| ||| | | || || | |||||| | |||||| || Sbjct 196 TCCATAAGGCATAATTTCATCAACGATTTCACCTAATCCAAATTCTTTCATTTGTAATTT 255 Query 19358 TACTGTATCTGCGTTCTTATAAGCGGATGGCAACTCAGAGATATCTATCTCTCCTGAGAA 19417 || || ||||| || |||||||| ||| || || |||||| | | ||||| | Sbjct 256 CACGGTTTCTGCATTTTTATAAGCACTTGGTAATTCGCTGATATCAACTTTTCCTGTATA 315 Query 19418 GAATCTTATATCTAACCCTGCAGTCTCGTCTTTGAATATCTGAGGGTTGCTCTTGGCTGA 19477 || | || |||||| | || || ||| || || ||| | | ||| || Sbjct 316 AAAACGTACATCTAAATTTTGTGTTTCTTCTGCAAAAATTTGATCAATCGTTTTGCCTTC 375 Query 19478 CATACTTCTCTTATGTGCTGCTCTACTTACATTTCTACCTGCACCGTGTGGAGCAAATCC 19537 | |||||| |||| || || |||| ||||| || || || ||||| ||||| || Sbjct 376 TTTGCTTCTCATATGCGCACTTCGACTTTGATTTCGTCCCGCTCCATGTGGTGCAAAACC 435 Query 19538 TAAGTTTGTTCTT-GTAGTTTTTCCTTTTACTATTAGTATAGGCTCTGCCATGTTTAAAG 19596 ||| || |||| || |||| |||||| || | || | ||| | ||| ||||||| Sbjct 436 -AAGATTATTCTCAGTCGTTTGTCCTTTAACCACTAAAACAGGTTGGCTCATATTTAAAG 494 Query 19597 GTATTAGTCTTAGACCCTCTGTA-GAATCCGGTACAAACTTATCATCTAAAGGGGTTGCG 19655 | |||| | || || | | || ||||| || ||||| |||||| | || ||||| Sbjct 495 GAATTAAACGAAGCCCAT-TATATGAATCTGGCACAAAAGCATCATCAAGCGGTGTTGCA 553 Query 19656 CCTTTGGCATGGTAGAACTTATCTCCGTCCTTGAATACAAAATTGTGCTCATTCCAAAAA 19715 ||||| ||||| || || |||||| | ||||| |||||||| || |||||||||| Sbjct 554 CCTTTTGCATGATAAAAAAGATCTCCTTTTTTGAAGACAAAATTATGTTCATTCCAAA-- 611 Query 19716 GATCTTATTGGAGTAGTCTTCAACTTG--TTTGCTAC---CCTATTGTGTATAGAAGAGT 19770 |||| || || | | | || || ||| | || | || || | | | | Sbjct 612 -ATCT--TTCGACAATTTTAGCACCTGATTTTTCAACAATCGCATCATGCAAAACCGTAT 668 Query 19771 GGTTTAATTTAGTCCATTCTCTTAGTATTTGCAAAGCCTCCCAATACAACTCTCCTTCTT 19830 | || | |||||||||||| | | || || | || | |||||| |||||||||| Sbjct 669 GATTCATTTTAGTCCATTCACGAATTAACTGAAGCGCTTGCCAATAACTTTCTCCTTCTT 728 Query 19831 TTTCTTCAAAAGGTATCCAAGCATT 19855 | ||||||||| ||||| ||||| Sbjct 729 CTGTTTCAAAAGGAATCCACGCATT 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231496569790695