Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq172366 221 1e-52 seq6671 138 1e-27 seq169730 102 7e-17 >seq172366 Length=6938 Score = 221 bits (244), Expect = 1e-52 Identities = 1138/1795 (63%), Gaps = 59/1795 (3%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 |||||| |||||||| | ||| |||| ||||||||| || || | || |||||||||||| Sbjct 5185 TTTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCC 5126 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| | ||| | ||| || || | || || |||||||| | || | || Sbjct 5125 AGTTTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGG 5066 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | ||||||||||| ||||| ||||| |||||||| |||| |||| || Sbjct 5065 TTCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGC 5006 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| |||||| |||| | || ||||| || |||||||||| || ||||| | Sbjct 5005 CATTTTAATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATGGG 4946 Query 138393 TCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CG--TTGGCCGCAATGATGCGATTTC 138448 | || || ||| | || ||||| || | || || || | || || |||| Sbjct 4945 TTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTT----GATATAATTTGATTCT 4890 Query 138449 TCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTATG 138507 |||| | || | | | |||| | || | | | || | | || | || | Sbjct 4889 TCATATTGTCATCCCATA-ATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACA 4831 Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 || ||||||||||| | || || || | ||| || || ||| | || ||||| Sbjct 4830 ACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAG 4771 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 ||||| || ||||| ||||| ||||| || | || || ||||| || || | | | Sbjct 4770 GATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAA 4711 Query 138628 GAATTCCGTAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCACAAA 138684 |||||||||| ||| | | ||| ||| ||||| | | ||| |||||||| Sbjct 4710 GAATTCCGTACACC---ATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAG 4654 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || | ||| | || |||||| ||||| || || | || ||| | ||||| ||| Sbjct 4653 TCTGTTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCT 4594 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804 || || || || || || ||| || ||| || ||| ||| ||||| | || ||| Sbjct 4593 TCATATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCA 4534 Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864 ||||| || ||||| || || ||| | || || | | || || || || Sbjct 4533 TAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGG 4474 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924 || | || | | || || || | || || || || | ||| | || ||||| Sbjct 4473 TAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGT 4414 Query 138925 CGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGATTTTG 138981 | || |||||| ||| |||||| | ||||||||| || | ||| |||||||| Sbjct 4413 CTCATATTTGA---TTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTA 4357 Query 138982 TTTAAA--TTTCGCACGACCACCTTAGTCGTA--TGCTTTAATC-GTTCAAAATCGTATG 139036 || ||| ||| | | || | | ||| | |||||| | || ||| || | Sbjct 4356 TTCAAATTTTTTGTA-----ACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAA 4302 Query 139037 TGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGC 139096 | | | | | || ||||| |||| | | ||| || || | ||| | Sbjct 4301 T-----CTTATTAGCAGA-------AACAAACATGTTTAGAGCAATAGACGCCAGGTTAC 4254 Query 139097 ACACCGCCACTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACA 139154 | || || | ||||| || |||| ||||| |||||||| | |||||||| || || Sbjct 4253 AAACAGCTATCTCGTCCGG--TGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCA 4196 Query 139155 CTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCAT 139214 || || || || | ||||| ||| || ||||||| ||| |||| ||| || || | ||| Sbjct 4195 TTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACAT 4136 Query 139215 ATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACA-AGTCCCT-AGCT 139272 ||| ||||| |||||||| ||||||| || || || | | || ||| || |||| Sbjct 4135 ATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGAT--AGCAAACCACAGTGACTGAGCT 4078 Query 139273 TGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGT 139332 | |||| | | | | || || || ||||| || | | || ||| | Sbjct 4077 TTAATTTTTCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCT 4018 Query 139333 TCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCG 139392 || || | ||| ||| || | || || | |||||||| || ||||| | || Sbjct 4017 TCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCA 3958 Query 139393 TTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGC 139452 | | | ||||| |||| || ||||| |||||||| | |||| | | || || ||| Sbjct 3957 TCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGC 3898 Query 139453 GCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCG 139512 ||| | | || || || | || ||||| || | || || |||| || | Sbjct 3897 GCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAA 3838 Query 139513 TGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACG 139569 ||||| || |||| ||| || || | ||||| || ||| ||||||||| || || Sbjct 3837 TGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACA 3778 Query 139570 TGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTG 139629 | ||| | ||||||| || || | |||||| ||| | | ||| | | |||||| || Sbjct 3777 TAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCCATTA 3718 Query 139630 GTGCTACGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGC 139687 || | || || |||| | |||||| | ||| |||||||| || ||||| | Sbjct 3717 GTAC--CGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTCCTC 3660 Query 139688 CGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGT 139747 | | |||| || || | | || | || | | | | || ||| ||| | Sbjct 3659 CAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATGGAAT 3600 Query 139748 CGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAA 139807 | | ||| || | || ||| || || || ||||| || | | || | || |||| Sbjct 3599 CTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAA 3540 Query 139808 ACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGG 139867 | | ||| ||| || || || || || || || | ||| | ||| ||||| |||| Sbjct 3539 ATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCAATGG 3480 Query 139868 CGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | | || || ||||| || || || || |||| ||||| |||||| || Sbjct 3479 CAGCATCGATGTCTTCACCGTGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 >seq6671 Length=4556 Score = 138 bits (152), Expect = 1e-27 Identities = 173/232 (75%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || ||||| || || || | ||||| || |||| | Sbjct 3524 ATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGA-GCCATC 3582 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| || ||||||||||||||||| || || || || || Sbjct 3583 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCA 3642 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTA 24879 ||| ||||||||||| || || || || |||| ||| ||| ||| |||| || || Sbjct 3643 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCG---CACATTGTCCGACTA 3699 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || |||||||| || || |||||||||||||| | ||||| ||| Sbjct 3700 CAATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGC 3751 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | ||||| ||||| || || | || || | ||||| | Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCG-AGCCATC 3810 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| |||||||| ||||| || ||||| || || Sbjct 3811 AGACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 3870 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || ||| |||| ||| | | | | |||| || || || Sbjct 3871 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 3930 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || |||||||| ||||| | ||||| ||| Sbjct 3931 TATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGGC 3979 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | ||||| ||||| || || | || || | ||||| | Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCG-AGCCATC 4266 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| |||||||| ||||| || ||||| || || Sbjct 4267 AGACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 4326 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || ||| |||| ||| | | | | |||| || || || Sbjct 4327 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 4386 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || |||||||| ||||| | ||||| ||| Sbjct 4387 TATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGGC 4435 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| ||||| || || | || || ||| | | Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || || ||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||||||||||| || || || || |||| ||| ||| ||| |||| || || Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCG---CACATTGTCCGACTAC 4156 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || |||||||| || || |||||||||||||| | ||||| ||| Sbjct 4157 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGC 4207 >seq169730 Length=1905 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || || || || || || | Sbjct 1745 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 1804 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || |||||||| ||||| ||||| |||||| Sbjct 1805 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 1864 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || |||||||| ||||| || ||||| |||| ||| Sbjct 1865 CAGCGTTTGATATTTGCTGGCAAACAATTGGAAGAT 1900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448928065048280