Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6671 91.5 1e-13 >seq6671 Length=4556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| || ||| ||||| || || ||||| || | | | ||| |||| Sbjct 4420 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATC 4361 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||||| || ||||||||| | || | || |||||||| Sbjct 4360 TTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 4301 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || | |||||| || | ||| ||| Sbjct 4300 TTGAATCTTGGCCTTGAC--ATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATG 4243 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || | ||||| || |||||||||||| Sbjct 4242 GTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 4207 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| || ||| ||||| || || ||||| || | | | ||| |||| Sbjct 3964 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATC 3905 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||||| || ||||||||| | || | || |||||||| Sbjct 3904 TTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 3845 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | |||||| || | ||| ||||| Sbjct 3844 TTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGT 3785 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| || |||||||||||| Sbjct 3784 TTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3751 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| |||||||| || || ||||| || | |||| |||| ||| Sbjct 4188 ACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCC 4129 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||| || |||||||||| || || |||||| | || | || |||||||| | Sbjct 4128 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGA 4069 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||||| || || || | || | ||||| || | ||| ||||| | Sbjct 4068 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGTTT 4011 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || | ||||| || |||||||||||| Sbjct 4010 TGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325008474746219