Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6671 141 7e-29 seq169730 123 2e-23 seq153791 98.7 8e-16 seq5352 82.4 6e-11 >seq6671 Length=4556 Score = 141 bits (156), Expect = 7e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| |||||| ||||| |||||||| || || || || || || | ||||| ||||| Sbjct 3739 ACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATG-TGCGAC 3681 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||| |||||||| | ||||| | || || || || |||||||| |||| Sbjct 3680 CATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTT 3621 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| ||| ||| |||| | ||||||||| | || ||||| | || | Sbjct 3620 TGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGA 3561 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || ||||| | ||||| ||||| || |||||||| Sbjct 3560 TTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTT 3521 >seq169730 Length=1905 Score = 123 bits (136), Expect = 2e-23 Identities = 125/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||||| ||||||| | || ||||| || ||||| |||||||| Sbjct 1900 ATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTT 1841 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | ||||||| |||| | ||| ||||| | || || |||||||| | Sbjct 1840 GTCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGA 1782 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||||| || | ||| || || || |||||||| || Sbjct 1781 TGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATATT 1742 >seq153791 Length=3075 Score = 98.7 bits (108), Expect = 8e-16 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||| | || ||||||||||| || ||||| || | | |||||| Sbjct 2616 ACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTATAGTCGGAGAATGTGCGACC 2675 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||||| ||| ||| | || ||||| || ||||| ||||||| Sbjct 2676 ATCTTCCAATTGTTTGCCAGCAAATACCAAACGCTGTTGATCTGGAGGAATTTCCTCTTT 2735 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 | || ||| | | ||| ||| |||| | | | ||||| | || || ||||||| Sbjct 2736 TTGCTG-AATCTAGGCTTTTACATTTTCGATACTATCAGAGGGCTCAACCGCAAGAGT 2792 >seq5352 Length=5729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 88949 GGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCG 89008 || || ||||| || ||||||||||||| |||||| | | ||||| ||||| ||||| Sbjct 3295 GGCTTACATGGCTTCCATGTGCACGAATTTGGCGATAATACCAACGGCTGCACATCGGCC 3236 Query 89009 GGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACG-CTTTAAT-GAAAC 89066 || ||||||||||||| ||||| || || ||||| || ||| | ||| | || Sbjct 3235 GGTCCACATTTCAATCCCGAGGGCAAAGAACATGGCGCACCGAACGACGAGAATCGTCAC 3176 Query 89067 ATGTTGGTGATTTGGGAAATGTTGAAGC 89094 || || ||||| || ||| ||||||| Sbjct 3175 TTG--GGCGATTTAGGTAATATTGAAGC 3150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384409801613541