Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq161907 244 8e-59 seq168992 178 1e-38 seq50802 125 5e-23 seq172092 118 8e-21 seq171700 114 1e-19 seq10855 100 2e-15 >seq161907 Length=3211 Score = 244 bits (270), Expect = 8e-59 Identities = 428/620 (69%), Gaps = 5/620 (1%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || |||||||||| ||| || || || ||||| ||| | | || Sbjct 3092 ACATCAAATGTGCCACCACCCAAATCGAATATTAGCACATTGCGTTCACCTTTCAGATTC 3033 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | |||||| || || || || || || || || || ||||| | ||| ||||| Sbjct 3032 TTGTCCAAACCATAAGCCAATGCTGCTGCTGTGGGCTCGTTGATAATGCGCAACACATTC 2973 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||| ||| ||||||||||| ||||| || | || || || || ||||| || Sbjct 2972 AAACCAGCTATTGCGCCTGCATCTTTGGTGGCCTGACGCTGCGAGTCATTGAAATAGGCT 2913 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 || || || || || ||||| | ||| | | || | ||| || |||||||| |||| Sbjct 2912 GGCACTGTGATGACTGCATCCTTGACTGTTGTGCCCAAATATGCTTCTGCTGTTTCTTTC 2853 Query 282515 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT-TTTG 282573 ||||| | || | |||||| |||| |||||||| ||| ||| |||| |||| Sbjct 2852 ATTTTGGTCAACACCATTGAACTGATTTCTTCTGGAGCGAATTTCTTCTGTTCACCTTTG 2793 Query 282574 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTT 282633 | | || || | |||||| || | |||| | || || |||||||| | || Sbjct 2792 AACTCC-ACGCTAAGCTTTGGTTTGCCACAATCATTTACCACCTTGAATGGCCAGTGCTT 2734 Query 282634 CATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 282693 ||| || | ||| | | | |||| | | | | |||||| || ||||| || || || Sbjct 2733 CATGTCGGCTTGTATTTTCTCATCATCATATTTGCGACCAATCAAACGTTTCGCGTCGAA 2674 Query 282694 AATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTC 282753 | || ||| ||||||| | ||| |||| | || || ||||| ||||| ||| | || Sbjct 2673 TACTGTGTTGCTTGGATTCATGGCAACTTGGTTCTTCGCCGCATCGCCAATGAGACGCTC 2614 Query 282754 TGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAAT 282813 | ||||| || | ||||| || ||||||||||| |||||||| || ||||| || Sbjct 2613 AGAGTCTGTGAAAGCTACATAGCTGGGTGTTGTGCGATTGCCTTGATCGTTTGCAATGAT 2554 Query 282814 TTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 ||| ||||| |||| ||| | || || ||||| || | ||||| || |||||||| || Sbjct 2553 TTCCACTTTGCCATGTTGGAAGACGCCAACACAGCTGTATGTTGTACCCAAATCAATGCC 2494 Query 282874 AATAG---CAATTTTATCTG 282890 ||| | | |||||| ||| Sbjct 2493 AATTGCTACCATTTTAACTG 2474 >seq168992 Length=1718 Score = 178 bits (196), Expect = 1e-38 Identities = 293/416 (70%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCT 282127 ||||| || | || |||||||| ||||| ||||| | | ||| || ||||| || Sbjct 876 GAAGAGAGCGTGCGCTTAGCACGCTCACAAGCTGTGCGCAATCTACGCAAGGCGC--GCA 819 Query 282128 GATTGATTCAAATCTG--TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA- 282184 ||| || | || | |||| || || | |||||| || || ||| | ||| | || Sbjct 818 CATTCTTTGACATGTCCTTTTTGTACTTGCGCTTGAACTCGTCCACAAA--ATGATTCAC 761 Query 282185 -AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 282243 | ||||||||| ||||| ||||| ||||| | |||| |||| || | | |||| Sbjct 760 CAAACGATTATCGAAATCCTCACCACCCAAATGCGTATCGCCTGCGGTGGACTTAACTTC 701 Query 282244 GAAAAGT---CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC 282300 ||| || || || |||| | || | | ||||| || |||||||||| ||| Sbjct 700 GAATAGCGAGCCTTCATCAATCGTCAGTATCGAGACATCGAAAGTGCCACCACCCAGATC 641 Query 282301 AAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCA 282358 ||| || || ||||| ||||| ||| |||||||| | ||||| || |||||| Sbjct 640 AAAGATCAGAACATT--TTTCTCGCCCTTCAAATTTTTATCTAAGCCATATGCTAAAGCA 583 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 ||||| || || || ||||| || | || ||||| || |||||||| || |||||| Sbjct 582 GCAGCGGTGGGCTCGTTAATTATGCGCAGCACATTCAGGCCAGCAATCGAGCCGGCATCT 523 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||||| ||||| | |||||||| |||||||| || || |||||||| |||||||| Sbjct 522 TTAGTCGCTTGCCGCTGTGAATCATTAAAATAAGCGGGTACAGTAATGACGGCATC 467 Score = 98.7 bits (108), Expect = 7e-15 Identities = 285/436 (65%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| || || |||| |||||| || || || || | |||||| | Sbjct 1564 ATTTGTAATCGTTATCTTCTCCGATTTGCCAGTGCTATTGTCCTTAGCCGACACATTCAA 1505 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 || |||| ||||| || ||| || | || || |||| || || || | | | || || Sbjct 1504 TATGCCATCGGCATTCATATCGAAAGCAACCTCGATTTTTGGCACGCCACGCGGTGCTGG 1445 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 || || || |||||||||||| |||| |||||| ||||| || | || || Sbjct 1444 CGGTATGCCAGTCAAATTAAATGTGCCCAAGAGATTATTGTCTTTGGTCATCGCACGCTC 1385 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT--AAATACT 281617 ||||||| | | |||||| || || || | ||||| || || ||||| |||| Sbjct 1384 ACCCTCGTAGACTTGGATGGTGACCGCATTCTGATTGTCGCTGTAGGTTGTGAAAATTTG 1325 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 ||| | | | || || || | || | ||||| | || ||||||| ||| ||| Sbjct 1324 CTG--CTGTCTGCATGGTATACGCGCATTACGCTCAATCAGCTTCGTCATAACACCGCCA 1267 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || ||||||| || | ||| || || | ||||| ||||| | | || ||| | ||| Sbjct 1266 GCCGTTTCTATGCCCAAAGACAGCGGTGCTACATCGACTAGCAATACATCTTG--GATTT 1209 Query 281738 TCATCAGTTTGACCAAC------AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | | |||||| | ||| || ||||| | |||||| ||||| || || Sbjct 1208 GC----GAACTACCAACGCCTGTCAAAATGGCCGCTTGCACAGCAGCGCCATAGGCCACC 1153 Query 281792 GCTTCATCAGGATTAA 281807 || ||||| ||||||| Sbjct 1152 GCCTCATCGGGATTAA 1137 >seq50802 Length=28812 Score = 125 bits (138), Expect = 5e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||||||||| | |||||| |||| || || || ||||| ||||| ||||| | || Sbjct 14329 GTTTTTATCCATACCATAAGCAAGTGCTGCTGCTGTTGGCTCATTGATAATACGTTTTAC 14388 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || |||||| ||||| | || |||||||| || ||||| | |||| ||||||||| || Sbjct 14389 ATCAAGACCCGCAATACGGCCAGCATCTTTCGTTGCTTGACGCTGTGCATCGTTAAAGTA 14448 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTG 282510 ||||||||||| ||||| || || || || | || | | || | |||||||| Sbjct 14449 AGCAGGAACAGTGATAACTGCTTCAGTAACAGGCTCGCCTAAAAAATCTTCAGCTGTTTG 14508 Query 282511 TTTCATTTTACTTAAAA 282527 ||||||||| |||||| Sbjct 14509 TTTCATTTTCATTAAAA 14525 Score = 105 bits (116), Expect = 5e-17 Identities = 272/409 (67%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 281404 TTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAA 281463 ||| ||||||| |||||| || | ||||| | ||||||||| ||||| | |||||| Sbjct 13289 TTTATTTGTTGCTTTATCTTTCGCTGATACATTGATAATACCATTCGCATCAATATCAAA 13348 Query 281464 TGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGT 281523 ||| ||||| ||||| || || || | | || ||||| || || | || | ||| Sbjct 13349 TGTTACTTCGATTTGTGGAACACCACGTGGCGCTGGTGGAATATCTGCTAAGTCAAACTG 13408 Query 281524 TCCCAGATTATTATTATCTTTAG--TGAATTTTCGTTCACCCTCGAAAATTTGGATAGTA 281581 || | | ||||| | || ||| || || || || | |||| || || || Sbjct 13409 ACCTAACGTTTTATTTTGCGAAGCTTGAGTTCTC--TCTCCTTGTAAAACATGAATCGTT 13466 Query 281582 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATT-TTTTACAAGGAATTGT 281640 || | | ||||||||||| | |||| |||||| ||| || ||| ||||| || Sbjct 13467 ACAGCTGGTTGATTATCTGTAGCTGTTGAGAATACT-TGGCTTGCTTTTGTTGGAATGGT 13525 Query 281641 TGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAG 281700 ||||||| | ||||| | || ||||||| || || |||||| | ||| | || | Sbjct 13526 TGTGTTTTTCTCAATGAGTTTAGTCATAACGCCGCCCATTGTTTCAATACCTAATGATAA 13585 Query 281701 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAAT 281760 ||| || || || | || | || || ||| | || || ||| | | || Sbjct 13586 AGGTGTTACGTCTAATAATAAAACAT----CAGT-----AACATTT---CCACCTAAAAC 13633 Query 281761 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 | | |||||| ||| |||||| | || || |||||||||||||| ||| Sbjct 13634 ACCACCTTGAACAGCCGCACCAGAAGCTACCGCTTCATCAGGATTCACA 13682 >seq172092 Length=4071 Score = 118 bits (130), Expect = 8e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 ||||||| | |||||| || | ||||| || |||||||||||||||| | || |||| Sbjct 2659 TTTTATCCATACCATAAGCCAGGGCAGCTGCCGTTGGTTCATTAATAACACGTAAGACAT 2718 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | |||||||||| || |||||||| || ||||| ||||||||||| || ||||||| Sbjct 2719 TTAAACCAGCAATTTGGCCGGCATCTTTTGTAGCTTGCCTTTGTGAATCATTGAAATATG 2778 Query 282453 CAGGAACAGT 282462 | || ||||| Sbjct 2779 CTGGTACAGT 2788 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTA-TTTTAAGAACATCTAAACCCG 86176 ||| || || || || ||||| |||||||||||||| | |||| |||| |||||| | Sbjct 2669 ACCATAAGCCAGGGCAGCTGCCGTTGGTTCATTAATAACACGTAAG-ACATTTAAACCAG 2727 Query 86177 CAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAG 86236 |||||| | | ||| || ||||| || |||| ||||| |||||||||||||||| Sbjct 2728 CAATTTGGCCGGCATCTTTTGTAGCTTGCCTTTGTGAATCATTGAAATATGCTGGTACAG 2787 Query 86237 TAATAACTGCTTTATTAATAGG 86258 | | ||||| || || | ||| Sbjct 2788 TTACGACTGCGTTCTTTACAGG 2809 >seq171700 Length=3140 Score = 114 bits (126), Expect = 1e-19 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || |||| || || ||||||||||| ||||| ||||| |||| |||||| | ||||| Sbjct 964 GTTGATTTCTCGTCACCAAATATTGCAAAAGAGATGCACGTTGGGCATTTACGCTCAACG 1023 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGG-ACACGATGTTTATCGTAT 637244 || || || || || |||||| | || | ||| | ||| ||| ||||| ||| | Sbjct 1024 ATAATAGGCGAGAGCATCTGTAGGTTCTT-GGAATTTATGGAACATGATGTGCTACGTGT 1082 Query 637245 TAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 ||||||| |||| |||||||| |||||||| || ||||||||||| Sbjct 1083 TAATCATTTGGGGGATTGGGGCACTCAATTTGGCATGTTAATTGC 1127 >seq10855 Length=7424 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| |||||||||||| ||||| | | ||||| || | |||| ||||| ||| Sbjct 2613 TGATTTTTGGCTGCATCGCCAATTAAGCGCTCTGTGTCATTGAATGCCACATAGCTTGGT 2554 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 |||||||| || ||||||||||| ||||| || || |||||| ||| ||||| ||||| Sbjct 2553 GTTGTGCGGTTGCCTTGATCATTGGCAATGATCTCGACTTTATTATTCTGCCACACACCG 2494 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || | ||||| || ||||| || || || || Sbjct 2493 ACGCAGGAGTAGGTTGTGCCCAAATCTATGCCGATCGC 2456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732166239466626