Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq103273 159 1e-33 seq155378 95.1 4e-14 seq3815 91.5 5e-13 >seq103273 Length=11660 Score = 159 bits (176), Expect = 1e-33 Identities = 199/272 (73%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 188633 TAGATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATTAGCTGTATCAGTTTATA 188692 ||||| | || ||||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 8228 TAGATGAATATGTTATTGGCCAAGAAAAAGCCAAAAAAACATTAAGTGTTGCAGTTTATA 8169 Query 188693 ATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaaga 188752 |||| ||||| ||| || | ||| || | ||| || |||| |||| | ||| Sbjct 8168 ATCACTATAAACGCCTTGAAACTCATACTCGTAAAACA------GATG-TGGAATTAAGT 8116 Query 188753 tcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTC 188812 ||| |||| || | ||| ||||||| || ||||| |||||||| ||||| || Sbjct 8115 -----AAAAGTAATATTTTATTAATTGGCCCAACAGGTTCTGGTAAAACTTTATTGGCAG 8061 Query 188813 AAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAG 188872 ||||| ||||| | |||||| |||| || | || || ||||||| || | ||||||| Sbjct 8060 AAACACTGGCTAAAATGTTAAATGTGCCATTTGCGATTGCTGATGCGACAACATTAACAG 8001 Query 188873 AAGCTGGTTATGTAGGTGAAGATGTGGAAAAC 188904 |||| |||||||| ||||||||||| |||||| Sbjct 8000 AAGCGGGTTATGTTGGTGAAGATGTAGAAAAC 7969 Score = 95.1 bits (104), Expect = 4e-14 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 189011 CATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTG 189070 |||| || || || ||||| ||||||||||| || || |||||||| ||||||| |||| Sbjct 7819 CATCAATCACTCGTGATGTTTCTGGCGAAGGCGTTCAACAAGCTTTGCTAAAAATTATTG 7760 Query 189071 AAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGC 189130 |||| || || || ||| | || |||||||| | ||||| ||| | || || Sbjct 7759 AAGGAACTGTCGCCTCTGTTTCACCACAAGGTGGAAGAAAACATCCTAATGCTGA---GC 7703 Query 189131 TTGAAA---TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTG 189187 ||| | | |||| | || || || |||||| ||| || || |||| |||||||| Sbjct 7702 TTGTTAGCGTTAATACGAAAAACATTTTATTTATTTGTGGCGGTGCTTTTGCTGGTCTTG 7643 Query 189188 AAAACAT 189194 |||| || Sbjct 7642 AAAAAAT 7636 >seq155378 Length=1514 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46576 AAACAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTAT 46635 |||| ||||| ||| | || ||||||||||| || ||||||| || |||||||| || | Sbjct 1312 AAACCATTTTATTTATTGATGAAATACATCGCTTTAATAAAGCGCAACAAGATTCATTGT 1253 Query 46636 TACCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTT 46695 |||| | | |||| ||| |||| || || ||||| ||||| |||||||| | || Sbjct 1252 TACCGTTTATTGAGTCTGGTGACATTATTTTTATCGGTGCGACAACAGAAAATCCCTCTT 1193 Query 46696 TTGAAATTAACGGAGCTTTA 46715 ||||| | || |||| ||| Sbjct 1192 TTGAATTAAATCGAGCATTA 1173 >seq3815 Length=18759 Score = 91.5 bits (100), Expect = 5e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 181272 CGCTTCAAAGGTCTTGGTGAAATGAACGCAGATCAACTTTGGGAAACAACAATGGATCCA 181331 |||| || ||||||||||||||||||||||| || | ||||||||||| |||||||| Sbjct 3837 CGCTATAAGGGTCTTGGTGAAATGAACGCAGAACAGTTGTGGGAAACAACGATGGATCCT 3896 Query 181332 AAAGAAAGAACATTGTTGCAAATTACGTTAGAAGACGCAGAAAGAGCATCTACAGTATTT 181391 || ||||| | || ||| | || | || || ||| ||| ||| | || ||| Sbjct 3897 AACACAAGAAGCCTTTTACAAGTCACAATTGATGATGCACAAAAAGCCGATGAAG--TTT 3954 Query 181392 TCTGAA--TTAATGGGTGGAGACGCAAAACCACGTCGCGATTTTATAGAAGCAAATGCGC 181449 || || |||||||| | || | ||||||| || || ||||| ||| |||||| | Sbjct 3955 TCACAATGTTAATGGGCGACGAAGTCGAACCACGCCGTGAATTTATCGAACAAAATGCCC 4014 Query 181450 A 181450 | Sbjct 4015 A 4015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588394048518848