Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq18725 141 2e-29 >seq18725 Length=24047 Score = 141 bits (156), Expect = 2e-29 Identities = 238/342 (70%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 38203 AGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGCTAT 38262 ||||| |||| || || || ||| | || || | || |||||||| || || ||| Sbjct 10200 AGAGGAATAAATAAAGTAATTTTATTGGGGCATTTAGGGCAAGATCCTGATGTTAAATAT 10259 Query 38263 CTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGAT 38322 | |||| || || ||||| | ||| | || || ||||| || || |||| ||| Sbjct 10260 ATGCCAAATGGTGGTGCAGTTACGAACTTAACGATTGCAACATCGGAAACTTGGAAAGAT 10319 Query 38323 AAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAG 38382 || ||||| || |||||| |||| ||||| ||||||||| || | | ||||| || Sbjct 10320 AAACAAACAGGTCAGCCACAAGATCGTACAGAATGGCACCGAATTGTTATTTTTGGAAAA 10379 Query 38383 CTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAG 38442 || |||||| |||| || |||| ||| |||||| || | ||||||||||||||| || Sbjct 10380 CTTGCTGAAATTGCAGGTCAATATCTTAAAAAAGGTTCGCTTGTTTATATTGAAGGTCAA 10439 Query 38443 CTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACACAATAGGCATTGTG 38502 | |||| | || ||| |||| ||| ||| || || || || |||| || || || Sbjct 10440 TTACAAACAAGAAAATGGACGGATAAAAACGGACAAGATCGTTATACAACAGAAATCGTT 10499 Query 38503 GTTCAGGGTTACAATGGTGTAATGCAAATGCTTGGTAGCAAA 38544 | |||| || ||||| | |||||||||| | | ||| Sbjct 10500 G-TCAGCATT--AATGGCACGCTCCAAATGCTTGATCGTAAA 10538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132627120534622