Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6671 150 4e-31 seq169730 127 4e-24 seq153791 113 9e-20 >seq6671 Length=4556 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| ||||| ||||| ||||| ||||| || || || | | | ||| Sbjct 4195 ACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACC 4136 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || ||||| ||||| | | ||||| ||||| || || |||||||| Sbjct 4135 ATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTT 4076 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||| ||||| || || ||||| || ||||| || || Sbjct 4075 GTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGAT 4016 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| || || |||||||| Sbjct 4015 GGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| |||||||| |||||||| ||||| || || || | | | || Sbjct 4423 ACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCC 4364 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||||||||| | | || || |||||||| || |||||||| Sbjct 4363 ATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 4304 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||| ||||| || || || || || ||||| || || Sbjct 4303 GTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGAT 4244 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| || || |||||||| Sbjct 4243 GGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| ||||| ||||| ||||| ||||| || || || | | | ||| Sbjct 3739 ACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACC 3680 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || ||||| ||||| | | ||||| ||||| || || ||||| || Sbjct 3679 ATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTT 3620 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || ||||| ||||||||||| || ||| || || |||||||| || || Sbjct 3619 GTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGAT 3560 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 ||||| || || | || || ||||| || |||||| | ||| Sbjct 3559 TGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTGATA 3517 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| |||||||| |||||||| ||||| || || || | | | || Sbjct 3967 ACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCC 3908 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||||||||| | | || || |||||||| || |||||||| Sbjct 3907 ATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 3848 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || || || ||||| || || || || || ||||| || || Sbjct 3847 GTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGAT 3788 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| || || |||||||| Sbjct 3787 GGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 >seq169730 Length=1905 Score = 127 bits (140), Expect = 4e-24 Identities = 129/167 (77%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| ||||| | |||||| |||||||| || | | |||||||||||||| ||||| || Sbjct 1903 ACCATCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTC 1844 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 || || |||||||| ||||| |||||||| || |||||| || || || || | ||| Sbjct 1843 TTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGT 1784 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 || || ||||| || | |||||||| || ||||||| |||| ||| Sbjct 1783 GATGGTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCA-TATTGTAT 1738 >seq153791 Length=3075 Score = 113 bits (124), Expect = 9e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || |||| |||||||||||| || |||||||| || || | | | ||| Sbjct 2616 ACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTATAGTCGGAGAATGTGCGACC 2675 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||| |||||||| | | | |||||||||||||| ||| | || || Sbjct 2676 ATCTTCCAATTGTTTGCCAGCAAATACCAAACGCTGTTGATCTGGAGGAATTTCCTCTTT 2735 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | ||||||| |||||||||||||| || ||||| Sbjct 2736 TTGCTGAATCTAGGCTTTTACATTTTCGATACTATCA 2772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979658453863939