Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6671 132 5e-26 seq172366 102 8e-17 seq5352 87.8 2e-12 >seq6671 Length=4556 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| |||||||| ||| || || | || || | ||||||||| Sbjct 4404 GTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGCTTGCCA 4345 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||||||||| ||||| |||| Sbjct 4344 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTG 4285 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||||| || || | ||||| |||||||||||||| ||| Sbjct 4284 ACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTC 4225 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4224 TTGACGAAGATCTGCATG 4207 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| |||||||| ||| || || | || || | ||||||||| Sbjct 3948 GTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCAACTGCTTGCCA 3889 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 3888 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTC 3829 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||||| || || | ||||| |||||||||||||| ||| Sbjct 3828 ACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTC 3769 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3768 TTGACGAAGATCTGCATG 3751 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||| ||| || ||| ||| | || || | |||||||| Sbjct 4176 GTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCA-TCTTCCAATTGCTTGCC 4118 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||| ||||| || || || ||||||||||| ||||| ||| Sbjct 4117 AGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTGGCCTT 4058 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || || || || | ||||| |||||||||||||| ||| Sbjct 4057 GACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGT 3998 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3997 CTTGACGAAGATCTGCATG 3979 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 133540 GCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGT 133599 ||||||| ||||| || ||||||||||| ||| || ||| | | ||| | || | Sbjct 4556 GCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCGATAGTAT 4497 Query 133600 CGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 ||| ||||| || || | ||||| |||||||||||||| ||| || ||||| ||||||| Sbjct 4496 CGGATGGCTCGACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCA 4437 Query 133660 TG 133661 || Sbjct 4436 TG 4435 >seq172366 Length=6938 Score = 102 bits (112), Expect = 8e-17 Identities = 256/385 (66%), Gaps = 8/385 (2%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || ||||| || || || || || || |||| ||||| || || ||||| || || Sbjct 4272 GCAATAGACGCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCT 4213 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||||| |||||||||||| || || || || ||||| || || || |||||||| Sbjct 4212 GTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAA 4153 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA--CTATGAACC 148998 | ||||| || | ||| || ||| |||||||| || || | ||| | || || | Sbjct 4152 GAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAAC 4093 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAG--CGACCCTCCTGCTCGTATAAAGT 149056 | ||| ||| || | || | || ||| || || || | || ||| Sbjct 4092 CA--CAGTGACTGAGCTTTAATTT--TTCTATTAGCACGGCCTTCTTTTTCATATTTTTC 4037 Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116 ||||| | ||| || | || || | || || || |||||||| || || || || Sbjct 4036 ATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACA 3977 Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 ||| || ||||| | || || | | ||||| |||||||| ||||| || | |||||| Sbjct 3976 CATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAG 3917 Query 149177 CGCGTACATGAGGTCGCGCGCCTTG 149201 ||||| | | ||| |||||| || Sbjct 3916 AGCGTAAAATAAGTCACGCGCCCTG 3892 >seq5352 Length=5729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526 ||| | || |||||||| |||||||| |||||||| | | |||||||||||| || ||| Sbjct 3295 GGCTTACATGGCTTCCATGTGCACGAATTTGGCGATAATACCAACGGCTGCACATCGGCC 3236 Query 116527 GGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCAC 116586 || ||| ||||| ||| ||| | || || ||||| || |||| || ||||||| Sbjct 3235 GGTCCACATTTCAATCCCGAGGGCAAAGAACATGGCGCACCGAACGACGAGAATCGTCAC 3176 Query 116587 GTCGGTGACCTGGGCAACATTGAGGC 116612 | || || | || || ||||| || Sbjct 3175 TTGGGCGATTTAGGTAATATTGAAGC 3150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482379022133240