Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq172366 235 1e-56 >seq172366 Length=6938 Score = 235 bits (260), Expect = 1e-56 Identities = 570/858 (66%), Gaps = 9/858 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| || || |||||||||||| | ||||| ||| || || || | | | Sbjct 3356 TACTTTGGCTTTAAGACTCTTGAACGTTCATATTTGCTTAAAGTTAAAGGTAAAGTTGTA 3415 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | || || || ||||| | | || | |||| || || || | || || | Sbjct 3416 GAGAGACCACAGCATATGTTGATGAGAGTATCAGTTGGAATACACGGTGAAGACATCGAT 3475 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| |||||| || || | | | |||| | || |||||| |||| || Sbjct 3476 GCTGCCATTGAAACATACAATTTGCTTTCTGAAAAATACTTTACCCATGCTTCTCCAACT 3535 Query 110484 CTATTTAACGCAGGAACTAATGGAGG--ACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 ||||| || | ||| | | ||| |||| || | ||||| ||| | || ||| Sbjct 3536 TTATTTGCTGCTGCAACAA--GAAGGCCACAACTGTCATCTTGTTTTTTGCTTACAATGG 3593 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| |||||||| |||| | || | || || ||| | ||||| ||| Sbjct 3594 TAGCAGATTCCATTGAAGGAATTTTCAAATCTGTAGAACAATGTGCAATGATTTCGAAAT 3653 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC-GCA 110660 ||||||||||||| || | |||||| |||||| | |||||| || ||| || Sbjct 3654 CAGCTGGAGGAATTGGAATCAATGTTCATTGTATTCGAGCTAAAGGAACATCTATATGCG 3713 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || || | |||| ||| | || || ||||| ||||| || || | ||| Sbjct 3714 GTA-CTAATGGAACATCAAATGGTTTAGTGCCTATGTTGAGAGTTTTTAATAATGTAGCA 3772 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 ||||| | |||||||| || || ||| | || ||||| ||| | || ||| Sbjct 3773 CGTTATGTAGACCAAGGTGGCGGAAAAAGGCCCGGCGCGTTCGCTATTTATTTGGAGCCT 3832 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||||||||||| || || || ||||| | |||||| |||| || ||||| Sbjct 3833 TGGCATTCAGATATTTTCGAGTTTTTAGACTTGAAAAAAAATACAGGAAAAGATGAACAC 3892 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 || || ||||| |||||||| || | |||||| | ||| | || |||||||| || || Sbjct 3893 AGGGCGCGTGACTTATTTTACGCTCTCTGGATTCCTGATCTTTTTATGAAACGCGTAGAA 3952 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 |||| ||||| || |||||||| ||| | || || || ||| | | Sbjct 3953 TCTGATGGAGACTGGTCACTAATGTGTCCCCATAAATGCCCCGGGCTTGATGAACTTTGG 4012 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA 111017 ||| |||| ||||| | | || ||||||||||||||||||||| | | | || Sbjct 4013 GGAGAAGAATTTGAGAAGTTGTATGAAAAATATGAAAAAGAAGGCCGTGCTAATAGAAAA 4072 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 ||| |||||| ||| ||||| ||| ||||| ||||||||||||||||||| ||| Sbjct 4073 ATTAAAGCTCAGTCACTGTGGTTTGCTATCATTGAAGCACAAGTTGAAACTGGAACACCT 4132 Query 111078 TATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 ||||| || ||||| ||| | || | ||| ||| |||| ||| | ||||| ||| Sbjct 4133 TATATGTTATATAAGGATTCTTGCAACAGAAAAAGTAACCAAAAAAATGTTGGAACCATT 4192 Query 111138 AAGTCTAGTAATTTGTGC 111155 || | || ||||||||| Sbjct 4193 AAATGCAGCAATTTGTGC 4210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184191263670361