Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_024785.1 Length=44844 Score E Sequences producing significant alignments: (Bits) Value seq111999 104 7e-18 >seq111999 Length=4320 Score = 104 bits (114), Expect = 7e-18 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 43869 TCAGATACGTTCTCAGCTTCATCAACCCA-GCACAGTAAAATACGTGCTTTGGATTTGAT 43927 || ||||| ||||| || || |||||||| ||| | |||||| | |||||| ||||| || Sbjct 3785 TCTGATACATTCTCCGCCTCGTCAACCCAAGCA-ATTAAAATTCTTGCTTTTGATTTTAT 3843 Query 43928 ACTGTCCAGATTGTGTCTAAGACCTGCAAACGTGTATTCAACCAGTCTGTTTTTAGTCCT 43987 || || ||||||||||| | || ||| | || | ||| | | ||||| || | Sbjct 3844 GCTATCAAGATTGTGTCTTAATCCGCTAAAAATATAATTAACACGCTTATTTTTCGTGCG 3903 Query 43988 GATGTAGTTCTCGCCCATATCGTAGTAATCATTCAGAAAAGGAACAGACCTGATAGCCTG 44047 || || |||||||| || || | |||||||| || ||| ||||| | ||||| || Sbjct 3904 TATATACTTCTCGCCAATCTCAAAATAATCATTAAGCCAAGCTACAGATTTTATAGCTTG 3963 Query 44048 CTTGATTTCCTCTAATGATGAGTCTGCTAGGGAGTTTAAGTGTTCACGCGCACAAAGAAT 44107 ||||| ||| || | || ||| ||| | || | || |||||| || || | || Sbjct 3964 CTTGACTTCTTCCATACTCGAATCTTCTAAGCTATTCATGTATTCACGGGCGCATAAGAT 4023 Query 44108 CACACCACT 44116 ||||| || Sbjct 4024 AACACCGCT 4032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143085665230172