Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6671 120 2e-22 seq153791 93.3 3e-14 >seq6671 Length=4556 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || |||||| || || || || ||||| ||||| Sbjct 3750 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 3691 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| || || || || ||||||||||| || ||| | || Sbjct 3690 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 3631 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||||| | || ||||| || | ||||| || || || Sbjct 3630 ATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || |||||| || || || || ||||| ||||| Sbjct 4206 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 4147 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| || || || || ||||||||||| || ||| | || Sbjct 4146 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 4087 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || | | |||| || | |||||| || ||| || Sbjct 4086 ATACCTTCCTTGTCTTGAATCTT-GGCCTTGACATTCTCAATGGTGTCTGATGGTTCGAC 4028 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || ||||||||||| Sbjct 4027 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || ||||| |||||| || || ||||| ||||| Sbjct 3978 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 3919 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 3918 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3859 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || ||| || | || | |||||| || || || Sbjct 3858 ATACCTTCCTTGTCTTGAATCTTGGCCTTC-ACGTTCTCAATGGTGTCTGATGGCTCGAC 3800 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || ||||||||||| Sbjct 3799 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || ||||| |||||| || || ||||| ||||| Sbjct 4434 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 4375 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 4374 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 4315 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || | | |||| || | |||||| || || || Sbjct 4314 ATACCTTCCTTGTCTTGAATCTT-GGCCTTGACATTCTCAATGGTGTCTGATGGCTCGAC 4256 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || ||||||||||| Sbjct 4255 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 >seq153791 Length=3075 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||| | | | ||| ||||||||||| | ||| |||||||| || || || |||| Sbjct 2603 CACCAACCCGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTATAGTCGG 2662 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 ||| |||||| | || ||||||||||| || ||||| | ||||||||| |||||| Sbjct 2663 AGAATGTGCGACCATCTTCCAATTGTTTGCCAGCAAATACCAAACGCTGTTGATCT 2718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328013347801920