Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6671 118 3e-21 >seq6671 Length=4556 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| |||||||| || |||||||| | ||| Sbjct 3539 AAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCATCTGACACTATTGAAAAT 3598 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| ||| || ||| || | | ||||| Sbjct 3599 GTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCACCAGACCAACAGCGTTTGATCTT 3657 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| ||||||||||| | || ||| |||| ||||| ||||||| || || Sbjct 3658 CGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAATATCCAGAAGGAATC 3717 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||| | || || Sbjct 3718 CACTCTTCACTTGGTGTTGCGTCTACG 3744 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| ||||| ||||| || || || ||| Sbjct 3755 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCAGAC 3814 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| ||| || ||| || Sbjct 3815 ACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAG 3874 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||||||||||||||| | || ||| |||| ||||| || Sbjct 3875 CGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAATATC 3934 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||||||| | || ||| | || || Sbjct 3935 CAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACG 3972 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| ||||| ||||| || || || ||| Sbjct 4211 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCAGAC 4270 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| ||| || ||| || Sbjct 4271 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAG 4330 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||||||||||||||| | || ||| |||| ||||| || Sbjct 4331 CGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAATATC 4390 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||||||| | || ||| | || || Sbjct 4391 CAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACG 4428 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| ||||| ||||| || ||| || ||| Sbjct 3983 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCAGAC 4042 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| ||| || ||| || Sbjct 4043 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAG 4102 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||| ||||||||||| | || ||| |||| ||||| || Sbjct 4103 CGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAATATC 4162 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||||||||| | || ||| | || || Sbjct 4163 CAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACG 4200 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||||||||||| ||| ||||| | ||| || Sbjct 3972 CGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTA 3913 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||| |||||| || || ||||| Sbjct 3912 CGCCCATCTTCCAACTGCTTGCCAGCAAAGAT 3881 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||||||||||| ||| ||||| | ||| || Sbjct 4428 CGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTA 4369 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||| |||||| || || ||||| Sbjct 4368 CGCCCATCTTCCAACTGCTTGCCAGCAAAGAT 4337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179210290438321