Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq116181 136 9e-27 >seq116181 Length=8378 Score = 136 bits (150), Expect = 9e-27 Identities = 277/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 298890 CTTGCTCGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAACA 298949 ||| ||||| ||| ||||| ||| | | | | ||||||| ||||||| ||||||||| Sbjct 2285 CTTTCTCGCCGAACTAAAAATAATCCAGTCTTAATTGGTGAACCTGGTGTTGGTAAAACA 2226 Query 298950 CAAATCATCGACGGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCTGAAA 299009 || ||||| || | || ||| ||| | | || | || || ||| ||||| Sbjct 2225 GCGATTATCGAAGGATTAGCGCAAAGAATTATTAACGGCGAAGTGCCAGAAGGTTTGAAA 2166 Query 299010 GACGTTGAAATTCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGT 299069 | | | |||||||| || | ||||| || | ||| ||| |||| | |||||| Sbjct 2165 AATAAATCAGTGCTTTCACTCGATATGGGTGCTTTAATTGCAGGTGCTAAATTCCGTGGT 2106 Query 299070 GAATTTGAAGAACGCATCGA--CAATTTGCTAAAAGAACTAAAGAAACGTGA---AAATA 299124 ||||| ||||| || | | | ||| |||| || || ||| | ||| | | | Sbjct 2105 GAATTCGAAGAGCGTTTAAAAGCGGTTT--TAAATGAGCTTGGGAAGCATGATGGACAAA 2048 Query 299125 CTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTT 299184 |||| | || |||||||| ||||||| |||||||| ||||| ||| ||||| Sbjct 2047 TTATTTTGTTTATTGATGAGATTCATACAATGGTTGGTGCTGGAAAAGCAG---ATGGTG 1991 Query 299185 CTATGGA--CATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAAT 299242 | ||||| || || |||||| | || || || | || |||||||| | | | || Sbjct 1990 CGATGGATGCAGGA--AATATGTTAAAACCTGCGTTATCTCGTGGTGAACTCCATTGTAT 1933 Query 299243 TGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGAT 299288 |||||| ||||||| ||||||||||| || ||||||| |||||| Sbjct 1932 TGGTGCGACAACATTAGATGAATATCGCCAATATATCGAAAAAGAT 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112707911927469