Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6671 125 6e-24 seq83617 91.5 1e-13 >seq6671 Length=4556 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | ||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 3978 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 3919 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| | || |||| |||||| || ||||| ||||| ||||||||||| | |||| Sbjct 3918 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3859 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||| ||||| | | | ||||| | || ||| Sbjct 3858 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACC 3799 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 3798 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | ||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 4434 CCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 4375 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| | || |||| |||||| || ||||| ||||| ||||||||||| | |||| Sbjct 4374 AAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 4315 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||| ||| | | | | | ||||| | || ||| Sbjct 4314 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACC 4255 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 4254 TCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | ||||||||| || | || ||||| || || ||||| |||| | Sbjct 3750 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 3691 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||| || || || ||||| ||||| ||||| | ||| Sbjct 3690 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 3631 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAG-AGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||||| ||| ||| |||| | | || | | ||||| | || || Sbjct 3630 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| ||||| || ||||| || | ||||||||||| || |||||| || Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTG 3520 >seq83617 Length=6259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || || | ||||||||| || | || |||| | | ||||||||||||||| Sbjct 1249 CCGCCGCGCAAGCGCAACACCAAGTGCAGTGTGGTCTCGGCTGGTATGTTGTAATCGGCC 1308 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| |||| || ||||| |||| ||||||||||||| || Sbjct 1309 AAGGTGCGGCCATCTTCCATCTGCCGGCCGGCAAAAATCAGACGCTGCTGGTCCGTCGGT 1368 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCC 35686 | ||||||| ||| |||||| ||| | | | |||||||| |||| ||| Sbjct 1369 ATATACTCCTTGCACATAATCTTTGCCTTAATAACCTCGACCGTGTC---CGATGGCTCC 1425 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| |||| || | || | || || || ||||||||||| Sbjct 1426 ACGTCCAGTATGATGGTGCGCTCGGTGAGTGTCTTGACGAATATCTGCAT 1475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449822134157080