Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq172366 178 1e-39 seq6671 123 3e-23 seq5352 100 3e-16 seq169730 93.3 4e-14 >seq172366 Length=6938 Score = 178 bits (196), Expect = 1e-39 Identities = 1112/1774 (63%), Gaps = 38/1774 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| || || | || | || || || ||||| |||||||| || || ||| | Sbjct 3425 CAGCATATGTTGATGAGAGTATCAGTTGGAATACACGGTGAAGACATCGATGCTGCCATT 3484 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||| ||| | || | ||| ||| | ||||| || ||||| || || | ||||| Sbjct 3485 GAAACATACAATTTGCTTTCTGAAAAATACTTTACCCATGCTTCTCCAACTTTATTTGCT 3544 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || | |||| ||| ||| |||| || ||||||||||| || ||| | ||| | Sbjct 3545 GCTGCAACAAGAAGGCCACAACTGTCATCTTGTTTTTTGCTTACAATGGTAGCAGATTCC 3604 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 || || || |||| ||| | | | || || | ||||| |||| | || ||| Sbjct 3605 ATTGAAGGAATTTTCAAATCTGTAGAACAATGTGCAATGATTTCGAAATCAGCTGGAGGA 3664 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCG-TGTCC---ACCAA 7859 || || | || || | | || || || || | |||| | | | || || Sbjct 3665 ATTGGAATCAATGTTCATTGTATTCGAGCTAAAGGAA----CATCTATATGCGGTACTAA 3720 Query 7860 CGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGT 7919 |||| | | | ||||||| ||| |||||| | || || ||||| | | || |||| Sbjct 3721 TGGAACATCAAATGGTTTAGTGCCTATGTTGAGAGTTTTTAATAATGTAGCACGTTATGT 3780 Query 7920 AGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGC 7976 |||||| || || ||| | ||||| || || ||||||||||| ||||| | Sbjct 3781 AGACCAAGGTGGCGGAAAAAGGCCCGGCGCGTTCGCTATTTATTTGGAGCCTTGGCATTC 3840 Query 7977 GGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCG 8036 || |||| || | || | || || | || || || || ||||| Sbjct 3841 AGATATTTTCGAGTTTTTAGACTTGAAAAAAAATACAGGAAAAGATGAACACAGGGCGCG 3900 Query 8037 CGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGC 8096 || |||| | || | ||| | || ||||| ||||||| ||||| | | || | Sbjct 3901 TGACTTATTTTACGCTCTCTGGATTCCTGATCTTTTTATGAAACGCGTAGAATCTGATGG 3960 Query 8097 ACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTA-TTAAAAAACGTTTACGGTTCAA 8155 | | ||||| || ||||| ||| || ||||| || | ||| ||| || | Sbjct 3961 AGACTGGTCACTAATGTGTCCCCATAAATGCCCCGGGCTTGATGAAC-TTTGGGGAGAAG 4019 Query 8156 AATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGC-----GGCAAGT 8210 ||||||| | ||||| || |||| ||| | || ||| ||||| | || | Sbjct 4020 AATTTGAGAAGTTGTATGAAAAATATGAAAAAGAAGGC-----CGTGCTAATAGAAAAAT 4074 Query 8211 GAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTA 8270 ||||| | ||| || || || ||| ||| ||||| || | || || Sbjct 4075 TAAAGCTCAGTCACTGTGGTTTGCTATCATTGAAGCACAAGTTGAAACTGGAACACCTTA 4134 Query 8271 CATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTG 8330 ||| | || || || |||||||| ||||| || |||| || || || |||||| Sbjct 4135 TATGTTATATAAGGATTCTTGCAACAGAAAAAGTAACCAAAAAAATGTTGGAACCATTAA 4194 Query 8331 TTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTG 8390 ||||||||| ||||| | ||||||||| | || || || ||||| | || ||||| Sbjct 4195 ATGCAGCAATTTGTGCACAGAAATTGTAGAATATTCAGCACCGGACGAGATAGCTGTTTG 4254 Query 8391 CAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCA-AACACTTACGACT 8449 || || ||||| | | ||||| ||| ||| | ||| | || | || |||| Sbjct 4255 TAACCTGGCGTCTATTGCTCTAAACATGTTTGTTTCT----GCTAATAAGATTTTTGACT 4310 Query 8450 TTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA--TTTAGATCGCATCATTGA 8507 || || | | ||| | | | ||| | ||| || ||| || ||||| || Sbjct 4311 TTCAAAAGCTTAAAGAAGT--TACAAAAACAGTTACAAAAAATTTGAATAAAATCATAGA 4368 Query 8508 TGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGG 8567 | |||||| |||||| | ||||| ||| || ||| | || ||||| | || Sbjct 4369 TATCAATTATTATCCTCTTCCCGAAGCTAAGAAATCAAATATGAGACATCGACCCATAGG 4428 Query 8568 CGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCA 8627 | || || || || | || || || | || |||| ||| || ||||| | Sbjct 4429 AATTGGGGTTCAGGGCTTCGCTGATGCACTAATACTGATGCGTTACCCATATGAAAGTGA 4488 Query 8628 AGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGC 8687 |||| | | || || ||||| ||||| | || || || |||||||| || Sbjct 4489 GCAAGCATATTTATTAAATATCCAAATATTTGAAACAATCTACTATGGGGCATTAGAGGC 4548 Query 8688 CAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAG 8747 ||||| || | || | || || | || ||||| || | || || |||| || Sbjct 4549 TAGCTGCGAATTAGCGGAAATGTTAGGGCCTTATGAATCATATGAAGGGAGTCCTGTAAG 4608 Query 8748 CCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAG 8807 | ||| |||||||||||||||||||| | || || || || |||||| |||||| Sbjct 4609 CAACGGGGTATTGCAATACGACATGTGGGACGTTACACCAACAGACTTGTGGGATTGGAA 4668 Query 8808 CGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACAT 8867 | |||||| |||||| | || ||| | || ||||| | | || ||| || Sbjct 4669 TGCTTTGAAGGAGAAAATTTCCAAACATGGTGTACGGAATTCTTTACTTGTTGCTCCTAT 4728 Query 8868 GCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAA 8927 ||| || || | || |||||||| | ||||| || ||||||||||| |||| ||| Sbjct 4729 GCCTACAGCATCTACAGCTCAAATTCTAGGAAATAATGAATCCTTTGAACCGTATACCTC 4788 Query 8928 CAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGAT 8987 || | ||| || || || || | || || ||| | | | |||| ||| | | Sbjct 4789 TAATATATACACAAGGCGTGTTTTATCTGGTGAATTTCAAGTTGTTAATCATCACCTTCT 4848 Query 8988 GCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCGT-GGAAG 9046 | || | | |||| | | | || ||||| ||| || || | ||| Sbjct 4849 CAGAGATCTTACCGAACTCGAATTATGGGATGACAATATGAAGAATCAAATTATATCAAG 4908 Query 9047 CCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAA 9106 | || | || ||||| || | | ||| ||| |||| ||| | || || | Sbjct 4909 TC-GTGGTTCTATACAAAACATAGAAACTATTCCTAAACCCATTCGAGACTTATACAAGA 4967 Query 9107 CCGTTTGGGAAA--TGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTT 9164 | |||||||||| | | ||| || || |||||||| |||||||| ||||| Sbjct 4968 CAGTTTGGGAAATTTCAGTTAAATCA--ACAATTAAAATGGCTGCTGATAGAGGAGCTTT 5025 Query 9165 TATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTC 9224 |||||||| ||||| || |||||| | ||| || | ||| | || | | | | Sbjct 5026 CATTGATCAAAGTCAGTCGTTTAACATTCACGTTGCAGAACCCAACTATGGAAAGCTCAC 5085 Query 9225 CAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCAC 9284 ||||||| | ||||||| ||| | ||||| || ||||| |||||||| || Sbjct 5086 TTCAATTCATTTCTATGCTTGGAAGGCTGGTCTTAAAACTGGAATGTATTATTTGCGTAC 5145 Query 9285 AAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 || || |||||| | |||| ||||||| ||| Sbjct 5146 CAAGCCAGCCGCTAATGCTATACAATTTACTGTT 5179 >seq6671 Length=4556 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || ||||||||||| || || ||||||||| | ||| || Sbjct 4197 AGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGA 4138 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| || || ||||||||||| || || || || || ||||| Sbjct 4137 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCC 4078 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| || | ||||| || | ||| || || | || Sbjct 4077 TTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTG 4018 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 4017 ATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || ||||||||||| || || ||||||||| | ||| || Sbjct 3741 AGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGA 3682 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| || || ||||||||||| || || || || || |||||| Sbjct 3681 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCT 3622 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| ||| || || | ||||| || | || || || | || Sbjct 3621 TTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTG 3562 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || ||||| || | ||||| || || |||||||||||| Sbjct 3561 ATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTG 3520 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || || || || || ||||||||| | ||| | Sbjct 4425 AGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGC 4366 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| |||||||||||||| || || || || ||||| Sbjct 4365 CCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 4306 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| || | ||||| || | || || || | || Sbjct 4305 TTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTG 4246 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 4245 ATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || || || || || ||||||||| | ||| | Sbjct 3969 AGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGC 3910 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| |||||||||||||| || || || || ||||| Sbjct 3909 CCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 3850 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||| || | || || || | || Sbjct 3849 TTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTG 3790 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 3789 ATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 >seq5352 Length=5729 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 46434 GCCGCGCGATTCCACGTTGCCTAAATCACCCACGTGACGCTCTAGGGCGTTGGGCGCGCC 46493 ||||| | ||| | || |||||||| |||| |||||| | | |||| || ||||| Sbjct 3143 GCCGCTAGCTTCAATATTACCTAAATCGCCCAAGTGACGATTCTCGTCGTTCGGTGCGCC 3202 Query 46494 GTGTTTTTTGTGCGTAGGATTGAAATGTTCTCCCGCCGACGTGCATCCGTTGCTCGAATC 46553 |||| |||| | |||||||||||| || ||||| ||||| |||||| | ||| Sbjct 3203 ATGTTCTTTGCCCTCGGGATTGAAATGTGGACCGGCCGATGTGCAGCCGTTGGTATTATC 3262 Query 46554 TCCGAATTCGTGCACGTGAAATCCATGCAAACCTTTAGGCAACCCCAT 46601 || ||||||||||| || || ||||| || || || | || |||||| Sbjct 3263 GCCAAATTCGTGCACATGGAAGCCATGTAAGCCCTTTGCCAGCCCCAT 3310 >seq169730 Length=1905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 |||||||| ||||| ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 1890 TGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATC 1831 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || |||||| || | || || || | || || || ||||| |||||||| || Sbjct 1830 TTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCC 1771 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || | || || ||||| || ||||| |||| Sbjct 1770 GTAAGGGTCTTTACGAAGATCTGCATATTGT 1740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504309260130520