Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq172366 697 0.0 >seq172366 Length=6938 Score = 697 bits (772), Expect = 0.0 Identities = 1274/1847 (69%), Gaps = 24/1847 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACT-CCATCCGTAGAA 68453 || || || ||||| | ||| ||||| || ||||| ||||| || || ||| | ||||| Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 ||| || || || || ||| | || || || | ||||| || | ||| ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATT 68571 |||||| ||||||||||||||||| || |||||||| || | | ||| | | |||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGT--TGATTTAACTGAAATT 4978 Query 68572 TCCCAAATAGTCTT--AAAAATCT-GTTTGATATCATCTGGAAG-GCTCGTAT--TTTGA 68625 ||||||| ||||| | || ||| | || | | |||| | | ||| |||| Sbjct 4977 TCCCAAACTGTCTTGTATAAGTCTCGAATGGGTTTA---GGAATAGTTTCTATGTTTTGT 4921 Query 68626 ATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685 || || |||| | ||||||||| |||||| || | |||| ||| |||| || Sbjct 4920 ATAGAACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCG 4861 Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 || | | |||| || || || ||||||| | ||||||||| |||||||| || | | Sbjct 4860 GTAAGATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTT 4801 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 ||||| |||||| |||||| ||||| | |||||||||||||| ||||||||||| || Sbjct 4800 GTGTATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTA 4741 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 ||||| || |||||||| || || | |||| ||| | | ||||||| | ||||| Sbjct 4740 GATGCTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACCATGTTTGGAAATTTTC 4681 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 || || | | ||||||||||| | || | |||| ||| | ||| | |||||||| Sbjct 4680 TCCTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGC 4621 Query 68926 AGAATTCCGTTACTTGCATATGA-TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAG 68983 | | ||||| ||| || || ||| || ||||| ||||||||| ||| | ||| | Sbjct 4620 AATACCCCGTTGCTTACAG--GACTCCCTTCATATGATTCATAAGGCCCTAACATTTCCG 4563 Query 68984 CTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 69043 ||| ||| || || ||||||||||| || || || |||||||| || || | |||| | Sbjct 4562 CTAATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTA 4503 Query 69044 GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATC 69103 | ||||| ||| || |||| ||| | | || || | |||||| || || | Sbjct 4502 ATAAATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGC 4443 Query 69104 CCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAG 69163 ||||||||||||| || || |||| ||||||| ||||||| | | |||||| |||| || Sbjct 4442 CCTGAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAG 4383 Query 69164 GATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCT 69223 |||||||||| |||||||| |||||||| | |||| ||| ||| || || | Sbjct 4382 GATAATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTT 4323 Query 69224 TTAGTTTGAGAAAATC--AAATCGT-CCATCTATAACAAACATATTCAGTGCTACAGATG 69280 | || || |||| || ||||| | | | ||||||||| || || || | ||| | Sbjct 4322 TAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACG 4263 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | || |||||||| |||| ||| | | || ||||| || || ||||| || | || Sbjct 4262 CCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAAT 4203 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 | || ||||| || || || | ||||| || ||||| ||| |||| || | ||||| | Sbjct 4202 TGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTAT 4143 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | | ||| | || || |||||||||| || | ||| || |||| ||| | | Sbjct 4142 ATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT 4083 Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGA 69520 ||| || ||| | || ||| ||||||||||||| | ||| | | || | Sbjct 4082 GAGCTTTAATTTTTCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAA 4023 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 |||| |||||||||| ||||| | || || |||| || |||||||| | |||||| Sbjct 4022 ATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGT 3963 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 | ||||| | || ||||||||||| ||||| |||||||| ||||| ||| | | Sbjct 3962 CTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGT 3903 Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700 | | | || | ||| || ||||||||||||||||| | || | |||||| | ||||| Sbjct 3902 CACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATAT 3843 Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760 | |||||||| || || | ||| || || | | || || | ||| || || || | Sbjct 3842 CTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGT 3783 Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820 ||| || | || |||||| | ||||||| ||| || | | |||||| ||| | | Sbjct 3782 CTACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTC 3723 Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTC 69880 |||| || || | ||| | ||||| | || |||||| | || | | || |||| Sbjct 3722 CATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTC 3663 Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940 |||| || ||| || || | ||||| ||| | | | | || || || ||| Sbjct 3662 CTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATGG 3603 Query 69941 TATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCAT 70000 ||| ||| ||| |||| | |||||| |||| ||| | | | ||| | ||| Sbjct 3602 AATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCAG 3543 Query 70001 TAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA 70060 |||||| || ||||| || || || || ||||||||||||||| |||||||||||||| Sbjct 3542 CAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCAA 3483 Query 70061 TAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 | || | || || || ||| | || ||||| | | || | ||||||||||||||| Sbjct 3482 TGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTGT 3424 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 |||| ||||| |||| || | ||| | || ||||| ||| ||||| ||||| Sbjct 3423 GGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAG 3364 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 ||||| || |||||| ||| || | || || || || | ||||| Sbjct 3363 CCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685428502949640