Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq116181 136 9e-27 >seq116181 Length=8378 Score = 136 bits (150), Expect = 9e-27 Identities = 277/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Plus Query 332045 ATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTC 332104 |||||| ||||||| || ||||||||||| ||||||| |||||||| | | | || Sbjct 1887 ATCTTTTTCGATATATTGGCGATATTCATCTAATGTTGTCGCACCAATACAATGGAGTTC 1946 Query 332105 ACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATG--TCCATAGAACCATTACTTGCG 332162 |||||| || | || || || | |||||| || || ||||| | ||||| ||| Sbjct 1947 ACCACGAGATAACGCAGGTTTTAACATATT--TCCTGCATCCATCGCACCAT---CTGCT 2001 Query 332163 GAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTT---TCACGT 332219 ||||| |||||||| ||||||| |||||||| || | |||| | | | ||| | Sbjct 2002 TTTCCAGCACCAACCATTGTATGAATCTCATCAATAAACAAAATAATTTGTCCATCATGC 2061 Query 332220 TTCTTTAGTTCTTTTAGCAAATTG--TCGATGCGTTCTTCAAATTCACCACGATACTTAG 332277 ||| || || |||| ||| | | | || ||||| ||||||||||| | |||| Sbjct 2062 TTCCCAAGCTCATTTA--AAACCGCTTTTAAACGCTCTTCGAATTCACCACGGAATTTAG 2119 Query 332278 TACCAGCAGTCAATGCACCAACATTTAGTGAAAGAATTTCAACGTCTTTCAGGTGTTCAG 332337 ||| ||| | || ||||| | || |||||||| | | | ||||| ||| | Sbjct 2120 CACCTGCAATTAAAGCACCCATATCGAGTGAAAGCACTGATTTATTTTTCAAACCTTCTG 2179 Query 332338 GTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACAC 332397 | || | || | | ||| ||| || | || ||||| || ||||||||| |||| Sbjct 2180 GCACTTCGCCGTTAATAATTCTTTGCGCTAATCCTTCGATAATCGCTGTTTTACCAACAC 2239 Query 332398 CAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGAGCAAG 332443 ||| ||||||| | | | | ||| ||||| ||| ||||| ||| Sbjct 2240 CAGGTTCACCAATTAAGACTGGATTATTTTTAGTTCGGCGAGAAAG 2285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111370073604248