Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq116181 109 1e-18 >seq116181 Length=8378 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 48464 TGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTAT 48523 |||| ||| ||| ||| | |||| |||||||||||||||||| ||| | ||| || | Sbjct 2136 TGCTTTAATTGCAGGTGCTAAATTCCGTGGTGAATTCGAAGAGCGTTTAAAAGCGGTTTT 2077 Query 48524 TAAAGAACTTAAAAAACGAGA---AAATGTAATTTTGTTCATTGATGAAGTACATATTAT 48580 || || ||| || | || | | | |||||||| |||||||| | |||| || Sbjct 2076 AAATGAGCTTGGGAAGCATGATGGACAAATTATTTTGTTTATTGATGAGATTCATACAAT 2017 Query 48581 GATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGC 48640 | | |||||||| ||||| ||| | |||||| | ||||| | |||||||| Sbjct 2016 GGTTGGTGCTGGAAA-AGCAGA--TGGTGCGATGGATGCAGGAAATATGTTAAAACCTGC 1960 Query 48641 ACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAA 48700 | || |||||||| | | | ||| ||||| ||||| | || ||||||||||| | Sbjct 1959 GTTATCTCGTGGTGAACTCCATTGTATTGGTGCGACAACATTAGATGAATATCGCCAATA 1900 Query 48701 CATTGAAAAAGATGCTGCATTT 48722 || ||||||||| | ||| || Sbjct 1899 TATCGAAAAAGATCCAGCACTT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106545554018599