Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq24727 87.8 3e-12 >seq24727 Length=7596 Score = 87.8 bits (96), Expect = 3e-12 Identities = 189/283 (67%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 197592 TTATTGAAAGGAAAATAATTGTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACG 197651 |||| || ||| || ||| ||| || | |||||| | | || | | ||| | | Sbjct 5374 TTATCAAAGGGAGAAAAATCGTGCAAAATTATCTTAATTTAATCGATACAATTATTCAAA 5315 Query 197652 AGGGTCATGTTAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGA 197711 | ||| | |||||| ||| | |||||||| ||||| || || || || | |||| Sbjct 5314 AAGGTACTTTTAAAGATGATAGAACTGGAACTGGGACTTACTCGGTTTTCGGGCATCAGA 5255 Query 197712 TGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTT 197771 |||||||| |||| ||||||| || | || |||||||| ||| | || || | Sbjct 5254 TGCGTTTTAATTTAGCCGAAGGTTTTCCTCTTGTAACGACTAAAAAATTACATCTTAAAT 5195 Query 197772 CTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAG 197831 | ||||| ||||||| | ||||| | | ||| ||||| || | ||||||| | | Sbjct 5194 CGATTATTTATGAACTTTTATGGTTTTTAAATGGCGATACAAATATCAAATATTTAACCG 5135 Query 197832 ATAACGGCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGG 197874 |||| || || | |||||| || ||| |||| ||||| Sbjct 5134 ATAATGGTGTGAGAATTTGGAACGAATGGGCAGATAGTAATGG 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767535978177080