Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq172366 253 2e-62 seq6671 105 6e-18 seq169730 84.2 2e-11 >seq172366 Length=6938 Score = 253 bits (280), Expect = 2e-62 Identities = 1011/1578 (64%), Gaps = 39/1578 (2%) Strand=Plus/Minus Query 130401 CACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACA 130460 |||| || || || || ||||| || ||||| | ||| |||||||| ||||||||||||| Sbjct 5189 CACTTTTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACA 5130 Query 130461 TGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TA 130518 | || ||||| || ||| || |||| || || || | | || || Sbjct 5129 TTCCAGTTTTAAGACCAGCCTTCCAAGCATAGAAATGAAT--TGAAGTGAGCTTTCCATA 5072 Query 130519 ATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTC 130578 ||||||| || ||| ||||| | ||| || ||||||||| ||||| || || || Sbjct 5071 GTTGGGTTCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATC 5012 Query 130579 TGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCT 130638 |||||||| | | | | |||| | || |||||| | |||||||||| || | Sbjct 5011 AGCAGCCATTTTAATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCG 4952 Query 130639 AATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTT 130698 |||| |||| || || | || ||| | ||| | | |||||||| || Sbjct 4951 AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATT 4892 Query 130699 GCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAAT 130758 |||| | | ||| | ||| | || | ||||||| | | | |||| ||||| Sbjct 4891 CTTCATATTGTCATCCCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAAC 4832 Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 | |||||| ||||||| | || || || ||| || || || |||||||||| Sbjct 4831 AACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAA 4772 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878 |||||| || || || | ||||| ||||||| ||| || ||||| || || | || Sbjct 4771 GGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAA 4712 Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938 |||||| || | ||| || | | ||||| |||||| ||| ||||||||| | Sbjct 4711 AGAATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTC 4652 Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA 130998 || ||| | || || |||||| || |||| | || || || || | ||||| Sbjct 4651 TGTTGGTGTAAC---GTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCC 4595 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 ||| | ||||| || ||| | || | ||| |||||| || || || || Sbjct 4594 TTCATATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCC 4535 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118 || || || ||||| ||||| |||||||| | ||||| | || || || || Sbjct 4534 ATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGG 4475 Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178 | ||| | || | || || |||| ||||| | ||||| || | |||| ||| Sbjct 4474 GTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATG 4415 Query 131179 TTTTAAATTACATTTACGCGAACATTCGGTG---GGATAAAGGTTAATGTCAATTATTTT 131235 | | | ||| |||| | | ||||| |||||| || || || || ||||| Sbjct 4414 TCTCATATTTGATTT---CTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTT 4358 Query 131236 GTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCC 131295 || ||||| || ||| ||| || ||| | || | || ||||| | Sbjct 4357 ATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAATCTT 4298 Query 131296 AGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTC 131355 | | | || ||||| |||| | || |||||||| |||||||| || | || Sbjct 4297 ATTAGC-AGAA--ACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTC 4241 Query 131356 GTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 ||| | |||| | |||||||| | ||||||||| |||| || ||||| || | Sbjct 4240 GTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAAC 4181 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 ||||| ||| || ||||| || | ||||| || | ||| || || || || || Sbjct 4180 ATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGT 4121 Query 131476 TTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATTTG 131533 ||| ||||| | |||||| || | | || | ||| |||| || || ||| Sbjct 4120 TTCAACTTGTGCTTCAATGAT--AGCAAACCACAGTGACTGAGCT-----TTAATTTTTC 4068 Query 131534 TATT-----GGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCA-AAC 131587 |||| |||| |||||| || ||||| |||||| | ||||| | || || || Sbjct 4067 TATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAA 4008 Query 131588 GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 | | || | ||| |||| |||||||||||| ||||| | || | ||| Sbjct 4007 GTTCA-TCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCT 3949 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || || |||||||| | ||| || | ||| | ||||| || | || | || | | Sbjct 3948 ACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGT 3889 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || ||| | || || |||||||||| | |||||| || ||||| || | |||||| || Sbjct 3888 TCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGC 3829 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACC 131824 |||||||| | || | ||||| | || ||| ||||| | |||| ||| | Sbjct 3828 TCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCT 3769 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 | || || | || | |||||| ||| | ||||| || | ||||||| || | Sbjct 3768 ACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCCATTAGT--ACCGC 3711 Query 131885 ATGTAGCTG--CCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATT 131942 || ||| || || || |||| || ||||| |||| |||||| ||||| | ||| Sbjct 3710 ATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATT 3651 Query 131943 TAGAGATTAGTGCGCATT 131960 | || || | ||| |||| Sbjct 3650 TCGAAATCATTGCACATT 3633 >seq6671 Length=4556 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| ||||| || | || || || || || |||||||||||| Sbjct 3752 TGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGG 3693 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | ||||| | || || || ||| | || | ||||||||| || || | Sbjct 3692 ACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTG 3633 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||| ||||| || ||| || ||| | |||| | |||||| | ||||| | Sbjct 3632 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCT-CG 3574 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| | || || | || || || || |||||||||||||||||||| Sbjct 3573 ACTTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| ||||| || | ||||| ||||| || |||||||||||| Sbjct 3980 TGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGG 3921 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | ||| | ||||| | ||| || || || | || | |||||| || || || | Sbjct 3920 ACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3861 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||| || || || |||||| |||| | | || | ||||||| |||| || Sbjct 3860 GAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGC-TCG 3802 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || | |||||| |||| ||| || || ||||| ||||| Sbjct 3801 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| ||||| || | ||||| ||||| || |||||||||||| Sbjct 4436 TGCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGG 4377 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | ||| | ||||| | ||| || || || | || | |||||| || || || | Sbjct 4376 ACAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 4317 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||| || || || |||||| || | | || | ||||||| |||| || Sbjct 4316 GAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGC-TCG 4258 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || | |||||| |||| ||| || || ||||| ||||| Sbjct 4257 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| ||||| || | || || || || || |||||||||||| Sbjct 4208 TGCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGG 4149 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | ||||| | || || || ||| | || | ||||||||| || || | Sbjct 4148 ACAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTG 4089 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || |||||| || | | || | ||||||| | ||| | Sbjct 4088 GAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGA 4029 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | |||||| |||| ||| || || ||||| ||||| Sbjct 4028 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 >seq169730 Length=1905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | || | |||||||||||| || || | |||||||| Sbjct 1899 TCTTCCAATTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 1840 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | |||| | ||| || | || ||||| || ||||| || Sbjct 1839 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 1780 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||| || || || || ||||| |||||| Sbjct 1779 GTTTTGCCCGTAAGGGTCTTTACGAAGATCTGCATA 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424041554529912