Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq172366 111 2e-19 seq110696 86.0 8e-12 >seq172366 Length=6938 Score = 111 bits (122), Expect = 2e-19 Identities = 445/693 (64%), Gaps = 21/693 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| || || | || || ||||||||| |||||||||| || | ||||| || || || Sbjct 4798 GTATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGA 4739 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||||| ||||| || || | | ||||| | | || | ||| | | || Sbjct 4738 TGCTGTAGGCATAGGAGCAACAAGTAAAGAAT--TCCGTACACCATGTTTGGAAATTTTC 4681 Query 110825 TCCTTGAGAACATCCCAGTCGTA---GT-TGAGCTTGGTTTCACCTTCCCACATGTCAAA 110880 ||||| | | ||| ||| || | || || ||||| | || | |||||||||| | Sbjct 4680 TCCTTCAAAGCATTCCAATCCCACAAGTCTG---TTGGTGTAACGT-CCCACATGTCGTA 4625 Query 110881 CTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 || | ||||| | | | ||| || ||| | | |||||| | ||| ||| Sbjct 4624 TTGCAATACCCCGTTGCTTACAGGACTCCCTTCATATGATTCATAAGGCCCTAACATTTC 4565 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || ||||| ||||| ||||| | | | | || || |||||||| || | ||| Sbjct 4564 CGCTAATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATT 4505 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | | |||| || ||| ||| ||| || || || | | |||| |||| Sbjct 4504 TAATAAATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAA 4445 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC--- 111117 || ||||| || | || || |||| |||| |||||| || || | || || Sbjct 4444 GCCCTGAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTT---CTTAGCTTCGGG 4388 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 || |||||| |||| | || |||| | || | |||||| ||||| | ||||| | Sbjct 4387 AAGAGGATAATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAAC 4328 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237 ||| | ||| |||| | | |||||| | | | | | ||| || | || || Sbjct 4327 TTCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGAA---ACAAACATGTTTAGAGC 4271 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 || || |||| || |||||||| |||| ||| ||| || |||| ||||||||| Sbjct 4270 AATAGACGCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGT 4211 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || || ||| | ||||| || || | ||| ||||||||||| || ||||||| | Sbjct 4210 GCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGA 4151 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 |||||| || | ||| || || || || || || Sbjct 4150 ATCCTTATATAACATATAAGGTGTTCCAGTTTC 4118 >seq110696 Length=2941 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||||||||||||||||||||| | || ||||| || || ||||| ||| | Sbjct 153 GCCGACCGCATCAATCTCATCAATGAATAGTATGCATGGCGCATGTTTACGGGCCATTGC 212 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | ||| || || | | || ||||| |||||||| |||| ||| | | | | Sbjct 213 AAACATATCACGTACACGCGATGGTCCAACACCGACAAACATTTCCAAAAATTCCGAGCC 272 Query 11743 AGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| | |||||||| ||||||| ||| || || | ||| || | | ||| || Sbjct 273 AGAAACCGTAATGAATGGCACATTTGCTTCGCCTGCTGTTGCTTTCGCTAACAAGGTTTT 332 Query 11803 TCCCGTACCTGG 11814 || ||||| || Sbjct 333 GCCAGTACCAGG 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626678583189600