Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq172366 114 2e-20 >seq172366 Length=6938 Score = 114 bits (126), Expect = 2e-20 Identities = 434/675 (64%), Gaps = 11/675 (2%) Strand=Plus/Plus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || ||||| ||||| || ||| | || || || | || ||| ||| ||||| ||||| Sbjct 4118 GAAACTGGAACACCTTATATGTTATATAAGGATTCTTGCAACAGAAAAAGTAACCAAAAA 4177 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || | |||| | || |||||||| | |||| | ||| Sbjct 4178 AATGTTGGAACCATTAAATGCAGCAATTTGTGCACAGAAATTGTAGAATATTCAGCACCG 4237 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 || |||| ||||| |||||||| || || || ||||| || || ||| | | | Sbjct 4238 GACGAGATAGCTGTTTGTAACCTGGCGTCTATTGCTCTAAACATGTTTGT---TTCTGCT 4294 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 | |||| ||||| | | |||| || | |||||||| ||||| || || ||||| | Sbjct 4295 AATAAGATTTTTGACTTTCAAAAGCTTAAAGAAGTTACAAAAACAGTTACAAAAAATTTG 4354 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 105214 || | | | || |||| |||| ||| || || ||| ||||| ||||||||| Sbjct 4355 AATAAAATCATAGATATCAATTATTATCCTCTTCCCGAAGCTAAGAAATCAAATATGAGA 4414 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 || || || || || | || |||||||| |||| |||| | | || || || || Sbjct 4415 CATCGACCCATAGGAATTGGGGTTCAGGGCTTCGCTGATGCACTAATACTGATGCGTTAC 4474 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 ||| ||| || |||| | | | ||| | |||||||| || || || | Sbjct 4475 CCATATGAAAGTGAGCAAGCATATTTATTAAATATCCAAATATTTGAAACAATCTACTAT 4534 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | || | ||||| || | || || || || | || || |||||| | | ||| Sbjct 4535 GGGGCATTAGAGGCTAGCTGCGAATTAGCGGAAATGTTAGGGCCTTATGAATCATATGAA 4594 Query 105395 GGTTCTCCAGCTTCACAA-GGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA--- 105450 || ||| | | ||| ||||| | |||| || ||||||| | || | ||||| Sbjct 4595 GGGAGTCCTG-TAAGCAACGGGGTATTGCAATACGACATGTGGG-ACGTTACACCAACAG 4652 Query 105451 GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 ||| | || ||| | ||| | ||||| || | | ||| | || || Sbjct 4653 ACTT--GTGGGATTGGAATGCTTTGAAGGAGAAAATTTCCAAACATGGTGTACGGAATTC 4710 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 | | || | ||||| ||||| ||||| || || || ||||| | || |||||||||| Sbjct 4711 TTTACTTGTTGCTCCTATGCCTACAGCATCTACAGCTCAAATTCTAGGAAATAATGAATC 4770 Query 105571 CTTTGAACCCTACAC 105585 ||||||||| || || Sbjct 4771 CTTTGAACCGTATAC 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582003865685240