Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6671 179 4e-40 seq169730 141 1e-28 seq153791 127 2e-24 seq76123 98.7 1e-15 >seq6671 Length=4556 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | |||||||| || || || | ||||| ||| || Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 3811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || ||||| |||||||| || ||||||||||||||| Sbjct 3812 GACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 3871 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | || |||| |||||| | | ||||| ||| Sbjct 3872 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 3931 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || |||||||| | ||||||||||| |||||||| Sbjct 3932 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 3978 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | |||||||| || || || | ||||| ||| || Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||| |||||||| || ||||||||||||||| Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 4327 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | || |||| |||||| | | ||||| ||| Sbjct 4328 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 4387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || |||||||| | ||||||||||| |||||||| Sbjct 4388 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 4434 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || ||||| || || | || || ||| || Sbjct 3523 AATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCATC 3582 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | || |||||||| || ||||| || || ||||| |||||||| Sbjct 3583 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCA 3642 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || || ||||| |||||| | || |||| ||| || | | ||||| || Sbjct 3643 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 3702 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||||||||||||||| | || |||||||| |||||||| Sbjct 3703 TATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 3750 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | |||||||| || || || | ||||| || || Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| |||||| | || |||| ||| || | | ||||| ||| Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 4159 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||||||||| | || |||||||| |||||||| Sbjct 4160 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 4206 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | |||||||| || || || | ||||| ||| || Sbjct 4436 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCC 4495 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || ||||||| ||||| || |||||||| || ||||||||||||||| Sbjct 4496 GATACTATCGAGAACGTGAAGGCCAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 4555 Query 27526 C 27526 | Sbjct 4556 C 4556 >seq169730 Length=1905 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| ||||| || || ||||||||||||||| | | Sbjct 1745 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 1804 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || ||||||||||| ||||||||||||||||| || Sbjct 1805 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 1864 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG 27566 |||||| | || |||||||| || ||| | || |||| ||| Sbjct 1865 CAGCGTTTGATATTTGCTGGCAAACAATTGGAAGATGGTCG 1905 >seq153791 Length=3075 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27445 ACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAG 27504 ||||||| ||||||| | |||||| || | |||| | || || | |||||| | || Sbjct 2792 ACTCTTGCGGTTGAGCCCTCTGATAGTATCGAAAATGTAAAAGCCTAGATTCAGCAAAAA 2733 Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 |||| |||||||||||| || |||||| | | |||||||| || ||| | || |||| | Sbjct 2732 GAGGAAATTCCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAATTGGAAGATGGT 2673 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 || || | | ||||||||| ||||||| ||||| ||| | ||| | || |||||||| Sbjct 2672 CGCACATTCTCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCGTCTA 2613 Query 27625 CGCGGTGG 27632 || | ||| Sbjct 2612 CGGGTTGG 2605 >seq76123 Length=2128 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || || || || || ||||| ||||| ||||| ||| |||||||||||||||||||| | Sbjct 1124 CAAGATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTG 1065 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| || || || | |||||||| ||||||| || || || |||||||| || Sbjct 1064 GAAGATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTG 1005 Query 27616 TTGCGTCTTCGCGGTGG 27632 | || | || ||||| Sbjct 1004 CTCCGCTTGCGTGGTGG 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569081373959120