Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6671 159 3e-34 seq169730 118 9e-22 seq153791 95.1 1e-14 seq76123 95.1 1e-14 >seq6671 Length=4556 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||||||||| | || || | || || ||||| || Sbjct 3979 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATC 4038 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || ||||||||||| ||||| || ||||| || || Sbjct 4039 AGACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCA 4098 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| ||||| ||||||||||| || || | ||||| ||||| Sbjct 4099 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 4158 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || ||||| |||||| | || |||||||| Sbjct 4159 TATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGCAT 4209 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || | ||||| || || || Sbjct 3524 ATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCATCT 3583 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| |||||||||||||| || ||||| || ||| Sbjct 3584 GACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCAA 3643 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| ||||||||||| || || | ||||| ||||| Sbjct 3644 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 3703 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || ||||| |||||| | || |||||||| Sbjct 3704 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGCAT 3753 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||||||||| | || || | || || || || || Sbjct 4207 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATC 4266 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || ||||||||||| ||||| || || || || || Sbjct 4267 AGACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 4326 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||| || |||||||| | ||| | ||||| ||||| Sbjct 4327 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 4386 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| |||||| | || |||||||| Sbjct 4387 TATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGGCAT 4437 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||||||||| | || || | || || || || || Sbjct 3751 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATC 3810 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || ||||||||||| ||||| || || || || || Sbjct 3811 AGACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 3870 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||| || |||||||| | ||| | ||||| ||||| Sbjct 3871 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 3930 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| |||||| | || |||||||| Sbjct 3931 TATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGGCAT 3981 >seq169730 Length=1905 Score = 118 bits (130), Expect = 9e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 1745 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 1804 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| |||||||| || || || || |||||| Sbjct 1805 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 1864 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||||| |||| || ||||||||||||||||| Sbjct 1865 CAGCGTTTGATATTTGCTGGCAAACAATTGGAAGA 1899 >seq153791 Length=3075 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| | ||||| | || || || |||||||||||||| ||| || ||||||||| Sbjct 2744 ATTCAGCAAAAAGAGGAAATTCCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAA 2685 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||| || || | ||||| || || || ||||| || || || || |||||| Sbjct 2684 TTGGAAGATGGTCGCACATTCTCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTG 2625 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 || |||||| | |||| ||| Sbjct 2624 GTGTTGCGTCTACGGGTTGG 2605 >seq76123 Length=2128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 ||||| |||||||| || ||||| ||||| || |||||||| | || || || |||||| Sbjct 1124 CAAGATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTG 1065 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| | || | ||||| || ||||| ||||| |||||||| | ||| |||| Sbjct 1064 GAAGATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTG 1005 Query 27198 TTGCGTTTGCGGGGTGGCAT 27217 | || ||||| ||||| || Sbjct 1004 CTCCGCTTGCGTGGTGGTAT 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434007770052593