Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028767.1 Length=45653 Score E Sequences producing significant alignments: (Bits) Value seq170870 131 5e-26 >seq170870 Length=2402 Score = 131 bits (144), Expect = 5e-26 Identities = 220/318 (69%), Gaps = 3/318 (1%) Strand=Plus/Minus Query 19202 GTCTTCACGGACCTTGAGATACATCGCATCTACGAGAACAAACGGAAAGAGGCTGTCTGC 19261 ||| || ||||| || || || || ||||| || | || || ||| | |||| ||| Sbjct 1729 GTCCTCCCGGACTTTCAGGTAGATTGCATCCACCATCACGAAAGGATAATGGCTTTCTAA 1670 Query 19262 CAGGCTTCGATTATTCCAAGCAGTTACGATGGGATCCAGCCGCTTACAAAGGTCTGAAAC 19321 | |||||| | |||| | || | ||||| || || ||| || |||| || Sbjct 1669 TGG---TCGATTTTGAAAAGCTTTGACTACCGGATCGAGATTCTCACAGAGTGCTGATAC 1613 Query 19322 AGTGGATTTAGAAAACTCGGTTCCGCAGAGTTCTTCGGTTACTTGCGAGACTTTACGCGT 19381 ||||||||| ||||||| | ||||| ||||||||||| | | | ||| || || Sbjct 1612 AGTGGATTTGGAAAACTTTTTACCGCATAGTTCTTCGGTGATGTTTTCCATTTTGCGAGT 1553 Query 19382 AGAGACGCCGTTTACGACCATTTCCATCATCGCTAAGATTAACGCTTGTTCACTTCTCTG 19441 ||| || ||| ||| ||||||||||||||||| | | ||| ||||||||||| | ||| Sbjct 1552 AGATACCCCGCATACCACCATTTCCATCATCGCAAGTACTAAAGCTTGTTCACTACGCTG 1493 Query 19442 GTAACGACTAAAGAGCTCTGTCGTGAACTTCCCGCCACGGATGCGCGGAACACTTAGTGT 19501 || || ||| |||||||| | |||| ||| || |||||| |||| ||| || Sbjct 1492 ATAGCGCTGAAAAAGCTCTGTATTAAACTCTCCGTTGCGATGGCGCGGCACACGTAGGGT 1433 Query 19502 AATGGTTCCCACCCGCGT 19519 | ||| || || || || Sbjct 1432 GAGGGTACCTACGCGGGT 1415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145669165278630