Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq111999 102 3e-17 >seq111999 Length=4320 Score = 102 bits (112), Expect = 3e-17 Identities = 180/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 911 GAAACTGCTTGGCGGAAATTAATTCCAACCGTGCGTGAGAATAATTCCGAAATATGGGTA 970 ||||| || ||| || ||| | || || || || ||| || |||| ||| | |||||| Sbjct 3732 GAAACAGCATGGGCTAAGTTATTGCCGACTGTTCGAGAGGATGATTCAGAAGTGTGGGTA 3673 Query 971 ACTTGGAACCCGGAAAATAGAGGGAGCGCAACAGATACTCGCTTCAGGCAAAATCCACCT 1030 || ||||| || || | | |||||||| |||| || || || | ||| Sbjct 3672 ACGTGGAATCCTGAGAGGGAAAATAGCGCAACGGATAAGCGTTTTAGAAAGAATATTAGC 3613 Query 1031 GAAAACAGCTGCATAA---TTGAAATGAGTTACCAAGATAATCCTTGGTTTCCTGATGTG 1087 || | || || | |||| |||| |||||| |||||||||| || || | || Sbjct 3612 GATGAT---TGTATGACTGTTGAGATGAATTACCATGATAATCCTTTCTTCCCGAAAGTA 3556 Query 1088 CTCGAGCAAGAGCGGCTAAATGACAAACAGCGGCTTGATGATGCGACTTATCGCTGGATT 1147 | || | |||| |||| |||||| | || | |||||||||||||||||||||||| Sbjct 3555 TTAGAAAATCAGCGTTTAAACGACAAAGAACGTTTAGATGATGCGACTTATCGCTGGATT 3496 Query 1148 TGGGAAGGTGCTTATTTGGAA 1168 |||||||| || ||| | ||| Sbjct 3495 TGGGAAGGGGCATATCTTGAA 3475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159800176050480