Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028854.1 Length=43724 Score E Sequences producing significant alignments: (Bits) Value seq152293 114 4e-21 >seq152293 Length=1325 Score = 114 bits (126), Expect = 4e-21 Identities = 251/371 (68%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 21548 TTTGGCTTCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTGATAC 21607 ||| | |||||| || || | | || ||| || | || ||| ||||| ||||||| Sbjct 836 TTTTGATTCATAGTAATAAGCTCCTCGAGAAATGTTTAAAACGCGACACATCGCTGATAT 895 Query 21608 CGAGTATTTGTCACGATTACGCT-TCATGACATTTACTTTCGTCCCATGATCAGCGCTGC 21666 ||||| || ||| || | | || || | ||||||||||| | |||||||| || Sbjct 896 GCTATATTTATCTTTATT-CGTTCTGATAACTTCTACTTTCGTCCGAATATCAGCGCCGC 954 Query 21667 TTGCTTTAAAATATCGACTTCCATCTTAAGACGTTGATTTTCTTTTCGCAATGCAATAAG 21726 ||||||||||||||| ||||| || || || |||| ||| || ||| | ||| Sbjct 955 TTGCTTTAAAATATCATTCTCCATTTTTAGCTCTTTATTTAGTTTGCGTAATTCGCGAAG 1014 Query 21727 TTCATTCTCTTCTAGAGAACGATTATCCTTCTCAGAGAAGGATCCTGACTGATTTGCTTG 21786 ||| || |||||| ||| | || || || | ||| ||||| || ||||| ||| Sbjct 1015 TTCTTTTTCTTCTGGAGGCAGGTTGTCTTTTTATTTGAAAGATCCAGATTGATTGTATTG 1074 Query 21787 CTTGATCCAGCGATCCAATGCAGATGCACTCAGTTCATACTCATTTATAATGGCTGCTCT 21846 |||| ||| ||| || | || | | | | ||||| || ||| ||| || ||| Sbjct 1075 TTTGACCCATTTATCAAAAGTTGAGGGAGTTAAATCATATTCCGTTAAAATATCTTTTCT 1134 Query 21847 TGATTTTCCATTCTCGTGAAGTTGGACCATTTGTCTCTTGAAATCA-TCTGTGAATGTAC 21905 |||||||| | ||| | || ||||||||| | || |||||| ||| | || || Sbjct 1135 AGATTTTCCTGATTTGTGCAATTCTACCATTTGT-TTTTTAAATCATTCTTTAAAGACAC 1193 Query 21906 GTCTTTGTCTT 21916 ||||| || || Sbjct 1194 GTCTTGGTTTT 1204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139509002616732