Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq111999 96.9 1e-15 >seq111999 Length=4320 Score = 96.9 bits (106), Expect = 1e-15 Identities = 172/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 911 GAAACTGCTTGGCGGAAATTAATTCCAACCGTGCGTGAGAATAATTCCGAAATATGGGTA 970 ||||| || ||| || ||| | || || || || ||| || |||| ||| | |||||| Sbjct 3732 GAAACAGCATGGGCTAAGTTATTGCCGACTGTTCGAGAGGATGATTCAGAAGTGTGGGTA 3673 Query 971 ACTTGGAACCCGGAAAATAGAGGGAGCGCAACAGATACTCGCTTCAGGCAAAATCCACCT 1030 || ||||| || || | | |||||||| |||| || || || | ||| Sbjct 3672 ACGTGGAATCCTGAGAGGGAAAATAGCGCAACGGATAAGCGTTTTAGAAAGAATATTAGC 3613 Query 1031 GAAAACAGCTGCATAA---TTGAAATGAGTTACCAAGATAATCCTTGGTTTCCTGATGTG 1087 || | || || | |||| |||| |||||| |||||||||| || || | || Sbjct 3612 GATGAT---TGTATGACTGTTGAGATGAATTACCATGATAATCCTTTCTTCCCGAAAGTA 3556 Query 1088 CTCGAGCAAGAGCGGCTAAATGACAAACAGCGGCTTGATGATGCGACTTATCGCTGGATT 1147 | || | |||| |||| |||||| | || | |||||||||||||||||||||||| Sbjct 3555 TTAGAAAATCAGCGTTTAAACGACAAAGAACGTTTAGATGATGCGACTTATCGCTGGATT 3496 Query 1148 TGGGAGGGGG 1157 ||||| |||| Sbjct 3495 TGGGAAGGGG 3486 Score = 84.2 bits (92), Expect = 7e-12 Identities = 176/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 664 AAGTGGCGTTATTCTTTGCGGTCGTGAGTTTATGAACTCATTGGAAGAAAGCTCTCTTGA 723 ||| || ||||| | |||| ||||| | ||||| || ||||| | | || Sbjct 4033 AAGCGGTGTTATCTTATGCGCCCGTGAATACATGAATAGCTTAGAAGATTCGAGTATGGA 3974 Query 724 AGAAGTTAAACAGGCGATCAAGTCTG-AGCCTTTTTTAGCAAAtttttttGATGTCGGCG 782 |||||| || || || || || |||| ||| | ||| | || |||||| | |||| Sbjct 3973 AGAAGTCAAGCAAGCTATAAAATCTGTAGCTTGGCTTAATGA-TTATTTTGAGATTGGCG 3915 Query 783 AGAAGTATGTTCGCACTAAAGATGGGCGGATTTCTTATGTGTTTTCCGGACTTCGGCATA 842 |||||||| | ||||| ||| || ||| || |||| | ||| |||| | | || | Sbjct 3914 AGAAGTATATACGCACGAAAAATAAGCGTGTTAATTATATTTTTAGCGGATTAAGACACA 3855 Query 843 ACTTAGATAGCATCAAATCTAAAGCCCGTATTTTGATTGCGTGGATAGATGAAGCAGAAA 902 | | |||||||| ||||| ||||| | ||||| ||||| ||| | || || || || | Sbjct 3854 ATCTTGATAGCATAAAATCAAAAGCAAGAATTTTAATTGCTTGGGTTGACGAGGCGGAGA 3795 Query 903 CAGTAAGCGAAACTGCTTGG 922 ||| ||||| || ||| Sbjct 3794 ATGTATCAGAAACAGCATGG 3775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166381873948962