Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_028995.1 Length=43216 Score E Sequences producing significant alignments: (Bits) Value seq111999 89.7 1e-13 >seq111999 Length=4320 Score = 89.7 bits (98), Expect = 1e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 10871 CGTGAGTTTATGAATACGCTT-GCTGATTCTTCAATGGAAGAAATTAAGCAGGCGATTCG 10929 ||||| | ||||||| |||| | ||||| ||||||||| | ||||| || || Sbjct 4011 CGTGAATACATGAATA-GCTTAGAAGATTCGAGTATGGAAGAAGTCAAGCAAGCTATAAA 3953 Query 10930 AGAAGAACCGTTTCTAAATGATTATTATGAAATGGGTGAAAACTACATAAGAACCAAGAA 10989 | | | | | || |||||||||| ||| || || || || || ||| | || || || Sbjct 3952 ATCTGTAGCTTGGCTTAATGATTATTTTGAGATTGGCGAGAAGTATATACGCACGAAAAA 3893 Query 10990 TAAGCGTGTGACTTATTCGTTTTGTGGTTTGCGTCATAACTTAGACAGTATTAAATCTAA 11049 ||||||||| | |||| ||| | || || | || || | || || || ||||| || Sbjct 3892 TAAGCGTGTTAATTATATTTTTAGCGGATTAAGACACAATCTTGATAGCATAAAATCAAA 3833 Query 11050 AGCGCGTATTTTGCTGAGTTGGGTGGATGAGGCTGAGACGGTTTCAGAAATGGCTTGG 11107 ||| | ||||| | |||||| || ||||| |||| || ||||||| || ||| Sbjct 3832 AGCAAGAATTTTAATTGCTTGGGTTGACGAGGCGGAGAATGTATCAGAAACAGCATGG 3775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137886730645636