Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq108569 127 2e-24 >seq108569 Length=12232 Score = 127 bits (140), Expect = 2e-24 Identities = 193/272 (71%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 49214 TTTTATCGCCGACTCCACCTGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATA 49273 || |||| || || || ||||| ||||||||||| ||||| | ||||| |||| ||| | Sbjct 1938 TTGTATCACCAACACCGCCTGTTGAATGTTTATCAACTTTAATGCCTTCTATTTCTGACA 1997 Query 49274 GGTCAATTGTTTCACCAGAATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAG 49333 |||||| ||||| |||||||| | ||| || | ||||| | ||||| | | Sbjct 1998 AGTCAATCGTTTCGCCAGAATTCACCATAGCCATTGTTAAATTTGCACGCTCTTCATCAT 2057 Query 49334 ACATGCCATTGAAA-TAAATTGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCG 49392 ||| | |||||| |||| ||||| | | | |||||||||||||||||| || Sbjct 2058 TCATATC-TTGAAAGAAAATCGCCATCGCAAGCGCACTCATTTGATAATCAGGAATCTCA 2116 Query 49393 CCGTTCGTGTAACCGCGGATGATAAAATCAATTTCTTCTTTTGAAAGCTCATAACCATCC 49452 || || || || || | || ||| ||||| |||||||||| || | | ||||| Sbjct 2117 CCTTTGGTATATCCTTGAATAGCAAATTCAATCTCTTCTTTTGTTAGTGCTTTCCCATCT 2176 Query 49453 CGTTTTTTCGCAATTAAATCGACCATTCTCAT 49484 | |||||| | || | ||| ||||||||||| Sbjct 2177 CTTTTTTTAGAGATAATATCAACCATTCTCAT 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451051479181680