Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq76123 102 6e-17 seq6671 96.9 2e-15 seq5352 91.5 1e-13 >seq76123 Length=2128 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| |||| || |||||||| ||||||||||| || || |||||||| Sbjct 1121 GATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTGGAA 1062 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| || ||||| || ||||||||||||||| || | ||| |||| | Sbjct 1061 GATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTGCTC 1002 Query 28003 CGTTTGCGTGGCGG 28016 || |||||||| || Sbjct 1001 CGCTTGCGTGGTGG 988 >seq6671 Length=4556 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||| || ||||| || || || | || ||||| Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| ||||| |||||||||||| |||| || Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 3640 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || || || || || || || |||||||| || | |||| |||||||| ||| Sbjct 3641 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTAC 3700 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || || |||| | || ||||| |||||| | || || ||| Sbjct 3701 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGC 3751 >seq5352 Length=5729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24549 TGCCAAAAGGCTACCACGGATTTCATATTCACGAATTTGGCGATGTGACCAACGGTTGCA 24608 || |||| |||| || || || ||| | ||||||||||||||| |||||||| |||| Sbjct 3303 TGGCAAAGGGCTTACATGGCTTCCATGTGCACGAATTTGGCGATAATACCAACGGCTGCA 3244 Query 24609 CGTCGGCCGGTGAGCATTTCAATCCGTTTCACCAAGATCACGGTGGTCCTAAGGATGCAA 24668 | ||||||||| ||||||||||| | |||| || || | || || || | | Sbjct 3243 CATCGGCCGGTCCACATTTCAATCCCGAGGGCAAAGAACATGGCGCACCGAACGACGAGA 3184 Query 24669 TTCGTCACATGGGTGATTTGGGTAA 24693 ||||||| |||| ||||| ||||| Sbjct 3183 ATCGTCACTTGGGCGATTTAGGTAA 3159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355114684277727