Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6671 145 2e-29 >seq6671 Length=4556 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||||||||| |||||||| ||||| || || || | | ||| | |||||||| Sbjct 3961 GACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTC 3902 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || ||||| | || || ||||| ||||||| ||||||||||| || Sbjct 3901 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 3842 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| |||||||| || |||||||| || || ||||| | ||||| || || Sbjct 3841 AATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTT 3782 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | |||||| || || | |||||| Sbjct 3781 GCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||||||||| |||||||| ||||| || || || | | ||| | |||||||| Sbjct 4417 GACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTC 4358 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || ||||| | || || ||||| ||||||| ||||||||||| || Sbjct 4357 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 4298 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || || || || |||||||| || || ||||| | ||||| || || Sbjct 4297 AATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTT 4238 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | |||||| || || | |||||| Sbjct 4237 GCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || || ||||| || || || | | || | |||||||||| || Sbjct 3727 GTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTG 3668 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| |||||||| | || |||||||| || |||| ||||| ||||| ||||| || Sbjct 3667 CTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATTTT 3608 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || |||||||| || || || | ||||| ||||| || || Sbjct 3607 AGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGTCTTACCAGT 3548 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || ||||| | |||||||| Sbjct 3547 GAGTGTTTTCACAAAGATTTGCATTTT 3521 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || || ||||| || || || | | || | |||||||||| || Sbjct 4183 GTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCTTCCAATTG 4124 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| |||||||| | || |||||||| || |||| ||||||||||| || ||||| Sbjct 4123 CTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTT 4064 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || ||| ||||| | ||||| || || || || Sbjct 4063 GGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGTTTTGCCGGT 4004 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | |||||| Sbjct 4003 CAAAGTCTTGACGAAGATCTGCAT 3980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156591563274365