Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq169730 127 1e-24 seq6671 125 5e-24 seq76123 102 5e-17 seq153791 89.7 3e-13 seq83617 84.2 1e-11 >seq169730 Length=1905 Score = 127 bits (140), Expect = 1e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| ||||| |||||||| || ||||| || Sbjct 1742 AATATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 1801 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| | |||| | ||| || ||| |||||||| || | || |||||| Sbjct 1802 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 1861 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||||||||||| |||||||| ||||||||| ||||||| Sbjct 1862 CAACAGCGTTTGATATTTGCTGGCAAACAATTGGAAGA 1899 >seq6671 Length=4556 Score = 125 bits (138), Expect = 5e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| ||||| || || || ||||| | ||||| || | Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||||| | ||||| | |||| | |||||||||||| | || ||||| Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAA-TCCAAGACAAAGAAGGTATTCCACCAGA 3639 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||||| || || || ||||| ||| ||||||| | ||||| || ||| || Sbjct 3640 CCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTA 3699 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || ||||| Sbjct 3700 CAATATCCAGAAGGAATCCAC 3720 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || ||||| ||||| | || || || | | Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| |||||| | || ||||| || Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGA-TTCAAGACAAGGAAGGTATTCCACCAGACCA 4098 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || ||||| ||| ||||||| | ||||| || ||| ||||| Sbjct 4099 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 4158 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 4159 TATCCAGAAGGAATCCAC 4176 >seq76123 Length=2128 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || ||||||||| | || |||||||| || |||||||| ||||| || || ||| ||||| Sbjct 1121 GATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTGGAA 1062 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| ||| ||| || ||||| ||||||||||| ||| | ||| | || | Sbjct 1061 GATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTGCTC 1002 Query 23824 AGGTTGCGAGGAGG 23837 | ||||| || || Sbjct 1001 CGCTTGCGTGGTGG 988 >seq153791 Length=3075 Score = 89.7 bits (98), Expect = 3e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||||||||||||||| ||||||| ||||||||| ||||||| | ||||| || Sbjct 2723 CCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAATTGGAAGATGGTCGCACATTC 2664 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || |||||||| || || || ||||| || || Sbjct 2663 TCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTGGTGTT 2620 >seq83617 Length=6259 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| | || |||| || || || || | || Sbjct 1475 ATGCAGATATTCGTCAAGACACTCACCGAGCGCACCATCATACTGGACGTGGAGCCATCG 1416 Query 23671 GACACTGTTGAAAT-ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| || || | ||||| |||| | | || ||| || | ||||| | || || Sbjct 1415 GACACGGTCGAGGTTATTAAGGCAAAGATTATGTG-CAAGGAGTATATACCGACGGACCA 1357 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||| || ||||||| | ||||| || | ||||||||| Sbjct 1356 GCAGCGTCTGATTTTTGCCGGCCGGCAGATGGAAGATGGCCGCACCTTGGCCGATTACAA 1297 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| | ||| ||||| | || || || || | ||||| || || Sbjct 1296 CATACCAGCCGAGACCACACTGCACTTGGTGTTGCGCTTGCGCGGCGG 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337299395459708