Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq24727 129 8e-25 >seq24727 Length=7596 Score = 129 bits (142), Expect = 8e-25 Identities = 152/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 99231 TTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGC 99290 |||||||||| ||||||||||| ||| | ||||| ||||| || ||||||||||| Sbjct 5269 TTTTCGGGCATCAGATGCGTTTTAATTTAGCCGAAGGTTTTCCTCTTGTAACGACTAAAA 5210 Query 99291 GCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATG 99350 | || | ||||||||| | ||||| | ||||| | || |||||||| ||| Sbjct 5209 AATTACATCTTAAATCGATTATTTATGAACTTTTATGGTTTTTAAATGGCGATACAAATA 5150 Query 99351 TCAAATATTTAAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAG--ATGG 99408 |||||||||||| ||||||||||| | |||||| |||||||| | | | || |||| Sbjct 5149 TCAAATATTTAACCGATAATGGTGTGAGAATTTGGAACGAATGG--GCAGATAGTAATGG 5092 Query 99409 CGACCTCGGACCGGTATACGGTAA 99432 ||| | ||||| || || ||||| Sbjct 5091 CGATTTAGGACCTGTTTATGGTAA 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714920011124200