Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq172366 760 0.0 >seq172366 Length=6938 Score = 760 bits (842), Expect = 0.0 Identities = 1309/1878 (70%), Gaps = 26/1878 (1%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | ||||| || || | | || || || || ||||| | ||| ||||| ||| Sbjct 5184 TTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCA 5125 Query 76833 GTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGG 76891 ||||| ||||| || || ||| | |||||||| || || || || ||| | || Sbjct 5124 GTTTTAAGACC-AGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGG 5066 Query 76892 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 || || | ||||| || | ||||||||||||||| |||||||||||||||||||| || Sbjct 5065 TTCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGC 5006 Query 76952 CATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 |||||| || || | ||| | | ||||||||||| || ||| | | | | || Sbjct 5005 CATTTTAAT--TGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATG 4948 Query 77010 TCATCTGGAAG-GTTTGTAT--TTTGAATGGAACCACCATCTGATATAATTGTATTCTTT 77066 | |||| |||| ||| |||| || ||||||| | |||||||||| |||||| Sbjct 4947 GGTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTC 4888 Query 77067 ATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATT 77126 |||| |||| ||| |||| || || | | |||| || || ||| ||||||| | | Sbjct 4887 ATATTGTCATCCCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACAACT 4828 Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| ||||| || || | | ||||| |||||| |||||| ||||| | ||| Sbjct 4827 TGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGAT 4768 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||| | ||||||||| ||||| || || |||||||| || || | |||| | Sbjct 4767 TCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAAGAA 4708 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | ||||||| | ||||| || || | | ||||||||||| | |||| Sbjct 4707 TTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTCTGTT 4648 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA-TCCATT-AT 77364 ||| ||| ||||| | |||||||| | | ||||| || || || ||| || || Sbjct 4647 GGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAG--GACTCCCTTCAT 4590 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 ||| ||||||||| ||| |||| |||| ||| || || || || ||||| || || | Sbjct 4589 ATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAGT 4530 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 | |||||||| || || | |||| | | ||||| ||| ||| | || ||| Sbjct 4529 AGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGGTAAC 4470 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544 | | || || | ||||| || || |||||||| ||||| || || |||| ||||||| Sbjct 4469 GCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTCA 4410 Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604 |||| || | |||||||| |||| |||||||||||| || ||||| |||||||| | || Sbjct 4409 TATTTGATTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCAAAT 4350 Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATCTT-CCATCTA 77661 || | |||| ||| || || || || || |||| || ||||||| | | Sbjct 4349 TTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAG 4290 Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG- 77720 |||||||||||| | ||| ||||| || || |||||||| |||| ||| | || || Sbjct 4289 AAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGT--CCGGTGC 4232 Query 77721 -GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 | ||||| || || || || || | ||| || ||||| || || || | ||||| ||| Sbjct 4231 TGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTG 4172 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||| || ||| | ||||| || |||||||| | ||| | || || || ||||||| || Sbjct 4171 GTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTG 4112 Query 77840 TGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TCATAGATTTGTATCGCCTC 77897 || ||| || |||| ||| | |||| |||||| | | | ||| | | |||| Sbjct 4111 TGCTTCAATGATAGCAAACCACAGTGACT-GAGCTTTAATTTTTCTATTAGCACGGCCT- 4054 Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||| ||||||||| ||| | | |||||||| |||||||||| ||||| | || Sbjct 4053 TCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCG 3994 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 ||||||| || || ||||| | ||||||||| ||||| | || ||||||||||| Sbjct 3993 GGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATAAAA 3934 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 |||||||| ||||| ||||| ||||| || || | || ||||| || ||||||||| Sbjct 3933 AGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGTA 3874 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 || ||||| | || | |||||| | |||||| |||||||| || || | ||| || || Sbjct 3873 TTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCG 3814 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || || | ||| || || || |||| ||| | || |||||| ||||| Sbjct 3813 AACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAAACT 3754 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 |||||||| || | | ||| || ||||||||||| || || | ||| | |||| | Sbjct 3753 CTCAACATAGGCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGATGTTCCTTTA 3694 Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 || |||||| | || || || |||||||| || || || || | || || Sbjct 3693 GCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATCATTGCACAT 3634 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 ||| | | | | | || || || || || | | ||| |||| | |||||| Sbjct 3633 TGTTCTACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAAACAA 3574 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| ||| | ||| | ||| |||||| || ||||| ||||| ||||| Sbjct 3573 GATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAG 3514 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAAT 78496 ||||||||||||| | ||||||||||||||| || | || ||||| || | || || Sbjct 3513 TATTTTTCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTCTTCACCG-TGTAT 3455 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 ||| || | ||| | ||||||||||||||| ||||| || || ||| || | ||| Sbjct 3454 TCCAACTGATACTCTCATCAACATATGCTGTGGTCTCTCTACAACTTTACCTTTAACTTT 3395 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 | ||| ||||| ||| | ||| ||||| ||||| || |||||| ||| || | || Sbjct 3394 AAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAATCACGGTC 3335 Query 78617 GTAAATAATAACAGAATT 78634 || || || | ||||| Sbjct 3334 ATATATGATTGCCGAATT 3317 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 78752 tttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATC 78811 |||||| ||||| || |||| |||||||||||| || | ||||||| ||| ||||| || Sbjct 2839 TTTTTTAGTTTCTTTATGTAAATTAGATACAGCAATCCGAGCAGCTAAAATGGCATAGTC 2780 Query 78812 AGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGT 78871 | ||| | || || || |||| || ||||| ||||| ||| ||||||| ||| || Sbjct 2779 CGCATGGTTCGTTGTTAAACTGGCAGCAATTTCAGCCGCCAAATTATCTAATTCTTGCGT 2720 Query 78872 TGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 |||||| ||| ||| | || | ||||| || Sbjct 2719 TGTGACACCACAATACAAGCCATTGATAACCTT 2687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693171780052640