Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq172366 742 0.0 >seq172366 Length=6938 Score = 742 bits (822), Expect = 0.0 Identities = 1285/1847 (70%), Gaps = 24/1847 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACT-CCATCCGTAGAA 75456 ||||| || ||||| | ||| ||||| |||||||| ||||| || || ||| | ||||| Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 ||| || || || || ||| | || || || | ||||| || | ||||||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATT 75574 |||||| |||||||||||||||||||| |||||||| || || | ||| | | |||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAAT--TGTTGATTTAACTGAAATT 4978 Query 75575 TCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA-TTTGTAT--TTTGAATG 75631 ||||||| || ||| | | | | || | |||| | ||| ||| |||| || Sbjct 4977 TCCCAAACTGTCTTGTATAAGTCTCGAATGGGTTTAGGAATAGTTTCTATGTTTTGTATA 4918 Query 75632 GATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTT 75691 || || | | ||||||||| |||||| || | |||| ||| |||| ||||| Sbjct 4917 GAACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTA 4858 Query 75692 AAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG 75751 | | |||| || || ||| ||||||||| ||||||||| ||||| || || | | ||| Sbjct 4857 AGATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTG 4798 Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 || |||||| |||||| ||||| | |||||||| ||||| | ||||||||| || || Sbjct 4797 TATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGAT 4738 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 || || |||||||| || || | |||| ||| | | ||||||| | ||||| || Sbjct 4737 GCTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACCATGTTTGGAAATTTTCTCC 4678 Query 75872 TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGA 75931 || | | ||||||||||| | |||| |||| ||| ||||| | |||||||| | Sbjct 4677 TTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAAT 4618 Query 75932 ATTCCGTTGCTAGCATATGA-TCCATT-ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTA 75989 | |||||||| | | || ||| || ||||| ||| |||| ||| | |||| |||| Sbjct 4617 ACCCCGTTGCT--TACAGGACTCCCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 75990 GTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT 76049 |||||| || |||||||| || || || || |||||||| || || | |||| | Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 76050 CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 | |||| ||| ||| | || ||| | | || || | |||||| || | |||| Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||| | Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 ||||||| |||||||| |||||||| | |||| | |||| ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 76230 GTTTGAGAAAATCAAATTTTCCATCTATC----ACAAACATATTAAGAGCTATAGATGCT 76285 | || |||| ||||| | || || | |||||||| || ||||| ||||| || Sbjct 4319 GCTTTTGAAAGTCAAAAATCTTAT-TAGCAGAAACAAACATGTTTAGAGCAATAGACGCC 4261 Query 76286 AGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTA 76345 || |||||||| |||| ||| | | | ||||| || || || ||||| | ||| Sbjct 4260 AGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTG 4201 Query 76346 CTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAA 76405 || || || || ||||||| ||||| |||||| || ||| |||| || || |||||||| Sbjct 4200 CTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATAT 4141 Query 76406 AGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCT 76464 | | | | || ||||||||||||| |||| ||| || |||| ||| | |||| Sbjct 4140 AACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT-G 4082 Query 76465 AGCTTTTA-TTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 |||||| | || | ||| | | || | ||| ||||||||| | ||| ||| |||| Sbjct 4081 AGCTTTAATTTTTCTATTAGCACGGCCT-TCTTTTTCATATTTTTCATACAACTTCTCAA 4023 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 |||| |||||||||| ||||| | || || |||| || |||||||| | |||||| | Sbjct 4022 ATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGT 3963 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 | ||||| | || ||||||||||| |||||||| ||||| ||||| ||||| | Sbjct 3962 CTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGT 3903 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | || | || |||| || ||||||||||| ||||| | |||| ||||| | ||||| Sbjct 3902 CACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATAT 3843 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | |||||||| || || | ||| || || | | || || | ||| || || || | Sbjct 3842 CTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGT 3783 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 ||| ||| | || |||||| ||||||||||||| || | | || || ||||| | Sbjct 3782 CTACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTC 3723 Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883 |||| || || | ||| | |||| || |||||| | || | | || |||| Sbjct 3722 CATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGATTCCAATTC 3663 Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943 |||| || ||| || || | ||||| ||| | | | | || || || || Sbjct 3662 CTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATGG 3603 Query 76944 TATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCAT 77003 ||| | | ||| |||| | |||||| |||| ||| | ||| | ||| Sbjct 3602 AATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCAG 3543 Query 77004 TAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 77063 ||| || || ||||| ||||| || || ||||||||||||| | |||||||||||||| Sbjct 3542 CAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCAA 3483 Query 77064 TAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 | | || || || || || | || ||||| || | || | ||||||||||||||| Sbjct 3482 TGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTGT 3424 Query 77123 GGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 77182 |||| |||||| ||| || | ||| | ||| ||||| ||| | ||| ||||| Sbjct 3423 GGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAG 3364 Query 77183 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||||| || |||||| ||| || | || || || || ||||||| Sbjct 3363 CCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 |||||| ||||| || |||| ||| ||||| || || | |||||||| ||| |||||||| Sbjct 2839 TTTTTTAGTTTCTTTATGTAAATTAGATACAGCAATCCGAGCAGCTAAAATGGCATAGTC 2780 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCT 77461 | ||| | || || | |||| || ||||| ||||| ||| ||||||||||| Sbjct 2779 CGCATGGTTCGTTGTTAAACTGGCAGCAATTTCAGCCGCCAAATTATCTAATTCT 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711398017456320