Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq18725 82.4 2e-11 >seq18725 Length=24047 Score = 82.4 bits (90), Expect = 2e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27017 AGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTC 27076 || |||| ||| || ||||| || || || || || || |||| ||||||||||| || Sbjct 10405 AGATATTGACCTGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATTCTGTA 10346 Query 27077 TGCTCTTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGA 27136 | |||| ||| | ||||| ||||||||||| |||| | ||| ||||| | | Sbjct 10345 CGATCTTGTGGCTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCGTTAAG 10286 Query 27137 TTGGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAAT 27191 || | |||||| ||||| ||||| || || || ||||| | ||||||| Sbjct 10285 TTCGTAACTGCACCACCATTTGGCATATATTTAACATCAGGATCTTGCCCTAAAT 10231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133741634152560