Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq153683 89.7 8e-13 seq128228 89.7 8e-13 seq24727 89.7 8e-13 >seq153683 Length=1711 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 3499 TACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 3558 ||||||||||||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 215 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 273 Query 3559 AATCCTTCCCTCGCCACCAAT 3579 |||||||| | | |||||||| Sbjct 274 AATCCTTCTCCCACCACCAAT 294 >seq128228 Length=6682 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 3499 TACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 3558 ||||||||||||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 1071 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 1013 Query 3559 AATCCTTCCCTCGCCACCAAT 3579 |||||||| | | |||||||| Sbjct 1012 AATCCTTCTCCCACCACCAAT 992 >seq24727 Length=7596 Score = 89.7 bits (98), Expect = 8e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 201871 CTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAAGGTTTTCCGCTGGTCACCAC 201930 ||| |||||||| | |||||||| ||||| ||| ||||||||||| || || || || Sbjct 5274 CTCGGTTTTCGGGCATCAGATGCGTTTTAATTTAGCCGAAGGTTTTCCTCTTGTAACGAC 5215 Query 201931 CAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACAC 201990 ||||| | || ||| || || || |||| || | ||||| | | || || || Sbjct 5214 TAAAAAATTACATCTTAAATCGATTATTTATGAACTTTTATGGTTTTTAAATGGCGATAC 5155 Query 201991 CAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAA 202050 || ||| | ||||| | || || || | || ||| |||||||||| |||| || Sbjct 5154 AAATATCAAATATTTAACCGATAATGGTGTGAGAATTTGGAACGAATGGGCAGATAGTAA 5095 Query 202051 CGGTGACTTAGGCCCGGTGTACGGTAA 202077 || || ||||| || || || ||||| Sbjct 5094 TGGCGATTTAGGACCTGTTTATGGTAA 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786305043253960