Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq153683 87.8 3e-12 seq128228 87.8 3e-12 seq36071 86.0 1e-11 >seq153683 Length=1711 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 3045 TACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 3104 ||||||||||||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 215 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 273 Query 3105 AATCCTTCCCTCGCCACCAA 3124 |||||||| | | ||||||| Sbjct 274 AATCCTTCTCCCACCACCAA 293 >seq128228 Length=6682 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 3045 TACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCA 3104 ||||||||||||||||||| |||||||||||||||| || | | | ||||| |||||| Sbjct 1071 TACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGAAGGTTCG 1013 Query 3105 AATCCTTCCCTCGCCACCAA 3124 |||||||| | | ||||||| Sbjct 1012 AATCCTTCTCCCACCACCAA 993 >seq36071 Length=11490 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 5/135 (4%) Strand=Plus/Minus Query 3218 TAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCCACTC 3277 ||||||||||||| ||||| | | ||| | | || |||| |||||| |||||| | Sbjct 8231 TAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATT 8172 Query 3278 GAGACAACCAATTC----GGTTCTGTAGCTCAGTCGGT-AGAGCACGCCACTCATAATGG 3332 | | |||||||| || || ||||||||| ||| ||||||| | ||||||||| | Sbjct 8171 ATGCCTACCAATTCTTAAGGGCCTTTAGCTCAGTTGGTTAGAGCACTCGACTCATAATCG 8112 Query 3333 CGCGGTCGTTGGTTC 3347 | |||||||||||| Sbjct 8111 AGTGGTCGTTGGTTC 8097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781671849408000