Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq153683 91.5 2e-13 seq128228 91.5 2e-13 seq24727 87.8 3e-12 >seq153683 Length=1711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 4117 GGCGGGTTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGT 4176 || ||| ||||||||||||||||||| |||||||||||||||| || | | | ||||| Sbjct 208 GGTGGGATACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGA 266 Query 4177 AGGTTCAAATCCTTCACACGCCACCAA 4203 |||||| |||||||| | | ||||||| Sbjct 267 AGGTTCGAATCCTTCTCCCACCACCAA 293 >seq128228 Length=6682 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 4117 GGCGGGTTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGT 4176 || ||| ||||||||||||||||||| |||||||||||||||| || | | | ||||| Sbjct 1078 GGTGGGATACTCAAGCGGTCAACGAGGGCAGACTGTAAATCTGCTGGC-TAAGCCTTCGA 1020 Query 4177 AGGTTCAAATCCTTCACACGCCACCAA 4203 |||||| |||||||| | | ||||||| Sbjct 1019 AGGTTCGAATCCTTCTCCCACCACCAA 993 >seq24727 Length=7596 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 |||| ||| | || || || || || ||| |||||||| |||||||||||||| | Sbjct 5303 AAAGATGATAGAACTGGAACTGGGACTTACTCGGTTTTCGGGCATCAGATGCGTTTTAAT 5244 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 | | |||| || || || || || || ||||| || || || ||| || || | Sbjct 5243 TTAGCCGAAGGTTTTCCTCTTGTAACGACTAAAAAATTACATCTTAAATCGATTATTTAT 5184 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||||| || ||||| | || ||||| || || ||| | ||| | | || || || Sbjct 5183 GAACTTTTATGGTTTTTAAATGGCGATACAAATATCAAATATTTAACCGATAATGGTGTG 5124 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAA 196300 || || ||| | || ||||||||| |||||||| | || || || || ||||| Sbjct 5123 AGAATTTGGAACGAATGGGCAGATAGTAATGGCGATTTAGGACCTGTTTATGGTAA 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768647178355160