Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq18725 95.1 8e-15 >seq18725 Length=24047 Score = 95.1 bits (104), Expect = 8e-15 Identities = 185/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 44735 GCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGCGTCATCTGTCCACTTACGGGT 44794 |||||| | ||||| || || ||||| ||| ||| | ||| ||||| || | || Sbjct 10505 GCTGACAACGATTTCTGTTGTATAACGATCTTGTCCGTTTTTATCCGTCCATTTTCTTGT 10446 Query 44795 TTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTC 44854 || | || ||||| || || || | ||||||||| | ||| | || |||||||| Sbjct 10445 TTGTAATTGACCTTCAATATAAACAAGCGAACCTTTTTTAAGATATTGACCTGCAATTTC 10386 Query 44855 AGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGT 44914 |||||||||||| || | ||| | | ||||||||||| | |||| | || || || Sbjct 10385 AGCAAGTTTTCCAAAAATAACAATTCGGTGCCATTCTGTACGATCTTGTGGCTGACCTGT 10326 Query 44915 TTGCTTGTCGCGCCATGATTCATTCGTTGCGAT-GCTGAGTCTTCCGACCGCTCCGCCAT 44973 ||| || || ||| | ||| ||||| || | | ||| | || || || |||| Sbjct 10325 TTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCGTTAAGT-TCGTAACTGCACCACCAT 10267 Query 44974 TTGGTATATACCTGATCTCCGGGTCTTGCCC 45004 |||| ||||| | | || || |||||||| Sbjct 10266 TTGGCATATATTTAACATCAGGATCTTGCCC 10236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330203935385566