Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6671 132 1e-25 >seq6671 Length=4556 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||||||||| ||||| ||||| |||| || || | ||||||||| | Sbjct 4414 CAAG-TGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCA 4356 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | | ||||||||| | | || |||||||| ||||||| Sbjct 4355 ACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAA 4296 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | ||||||| ||| || || | || || ||||||| Sbjct 4295 TCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGC 4236 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 4235 CGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||||||||| ||||| ||||| |||| || || | ||||||||| | Sbjct 3958 CAAG-TGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAAGGTACGCCCATCTTCCA 3900 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | | ||||||||| | | || |||||||| ||||||| Sbjct 3899 ACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAA 3840 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | ||||||| ||| || || | || || ||||||| Sbjct 3839 TCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGACCTCCAAGGTGATGGTTTTGC 3780 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 3779 CGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151272139297071