Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq18725 131 5e-26 seq90214 96.9 1e-15 >seq18725 Length=24047 Score = 131 bits (144), Expect = 5e-26 Identities = 213/307 (69%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 36480 ACAATCTCTGTGGTGTATCTGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGC 36539 || || ||||| || || | ||| |||||| | || |||||||| | || | | Sbjct 10498 ACGATTTCTGTTGTATAACGATCTTGTCCGTTTTTATCCGTCCATTTTCTTGTTTGTAAT 10439 Query 36540 TGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGT 36599 || ||||| || ||||| ||||||||||| ||| |||| ||||||| ||| |||||| Sbjct 10438 TGACCTTCAATATAAACAAGCGAACCTTTTTTAAGATATTGACCTGCAATTTCAGCAAGT 10379 Query 36600 TTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTA 36659 || || || || ||||| || ||||| ||||| | |||| | ||||| || ||| Sbjct 10378 TTTCCAAAAATAACAATTCGGTGCCATTCTGTACGATCTTGTGGCTGACCTGTTTGTTTA 10319 Query 36660 TCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAA 36719 |||||||| || |||||||||| | | ||| || |||| ||| || | Sbjct 10318 TCTTTCCAAGTTTCCGATGTTGCAATCGTTAAGTTCGTAACTGCACCACCATTTGGCATA 10259 Query 36720 TATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCCGCGT 36779 |||||||| ||||| || | || | | || | | |||||||||||||| || | Sbjct 10258 TATTTAACATCAGGATCTTGCCCTAAATGCCCCAATAAAATTACTTTATTTATTCCTCTA 10199 Query 36780 GCCATTT 36786 ||||||| Sbjct 10198 GCCATTT 10192 >seq90214 Length=2210 Score = 96.9 bits (106), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 36476 AATGACAATCTCTGTGGTGTATCTGTCTATTCC-GTTGCTGT--CAGTCCATTTACGAGT 36532 ||| ||||| ||||| || || | || | || ||| ||| ||||||| || | ||| Sbjct 712 AATAACAATTTCTGTAGTATAACGATCAGTACCTGTTTTTGTATCAGTCCACTTTCTAGT 771 Query 36533 ACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTC 36592 ||| | || ||||| ||||| | || |||||| || |||| ||||||| ||| Sbjct 772 CTGAATTTTTCCCTCGATATAAACAAGTGATCCTTTTTTGAGATATTGACCTGCAATTTC 831 Query 36593 CGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGT 36652 |||||| || || || || || | ||||||||| || || |||| | | ||||| Sbjct 832 CGCAAGCTTGCCAAAAATAACTACACGATGCCATTCAGTTCTATCTTGTTGCTGTCCTGA 891 Query 36653 CTGCTTATCTTTCCACTGCTCAGATGTTGCAA 36684 || ||||||||||| ||||||||||||| Sbjct 892 TTGTTTATCTTTCCAGCTTTCAGATGTTGCAA 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151771845862812