Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq18725 102 2e-17 >seq18725 Length=24047 Score = 102 bits (112), Expect = 2e-17 Identities = 226/334 (68%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 26642 CAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTGTC 26701 |||||||||| | || ||| || || || | || ||| || || | ||||| |||| Sbjct 10530 CAAGCATTTGGAGCGTGCCATTAATGCTGACAACGATTTCTGTTGTATAACGATCTTGTC 10471 Query 26702 TGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACCTT 26761 | ||| |||| |||||||||||| | |||| ||||||| |||||| ||||||| Sbjct 10470 CGTTTTTATCCGTCCATTTTCTTGTTTGTAATTGACCTTCAATATAAACAAGCGAACCTT 10411 Query 26762 TTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCACT 26821 || ||||| | | |||||||| || ||||| || || || | |||||||| | Sbjct 10410 TTTTAAGATATTGACCTGCAATTTCAGCAAGTTTTCCAAAAATAACAATTCGGTGCCATT 10351 Query 26822 CCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACTG 26881 | || | || | | ||| || ||||| ||||| ||| ||| || || |||| | Sbjct 10350 CTGTACGATCTTGTGGCTGACCTGTTTGTTTATCTTTCCAAGTTTCCGATGTTGCAATCG 10291 Query 26882 TAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC--AA 26939 | | ||| | || ||| || | || |||| | | || ||||| ||||| || Sbjct 10290 TTAAGTTCGTAACTGCACCACC-ATTTGGCATATATTTAACATCAGGATCTTGCCCTAAA 10232 Query 26940 GGCGACCAATAATGATCACCTTATTTACGCCTCT 26973 || ||||||| || || ||||||| ||||| Sbjct 10231 TGC-CCCAATAA-AATTACTTTATTTATTCCTCT 10200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129031297228610